Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025642.1-P | Field mustard | cytosol | 73.57 | 74.64 |
| CDY30270 | Canola | cytosol | 74.29 | 67.1 |
| CDX74426 | Canola | golgi, mitochondrion, plastid | 74.64 | 63.72 |
| PGSC0003DMT400078655 | Potato | mitochondrion | 47.5 | 52.78 |
| VIT_14s0006g01240.t01 | Wine grape | cytosol, plastid | 56.43 | 51.47 |
| KRG97930 | Soybean | cytosol, plastid | 53.21 | 50.17 |
| KRH38399 | Soybean | cytosol | 11.79 | 49.25 |
| KRH30945 | Soybean | cytosol, plastid | 52.14 | 49.16 |
| TraesCS6B01G130700.1 | Wheat | cytosol | 48.21 | 46.23 |
| TraesCS6A01G102300.1 | Wheat | cytosol, plastid | 47.86 | 45.89 |
| TraesCS6D01G090900.1 | Wheat | cytosol | 47.14 | 45.21 |
| GSMUA_Achr7P10230_001 | Banana | extracellular | 49.64 | 45.13 |
| Os02t0135900-01 | Rice | plastid | 48.57 | 44.44 |
| KXG29421 | Sorghum | cytosol, plastid | 47.14 | 42.86 |
| Zm00001d015200_P003 | Maize | plastid | 48.93 | 41.39 |
| HORVU6Hr1G018500.10 | Barley | plastid | 46.43 | 38.12 |
| Solyc02g091530.2.1 | Tomato | nucleus | 48.21 | 36.78 |
| AT1G27070.1 | Thale cress | plastid | 19.29 | 10.15 |
| AT5G03420.1 | Thale cress | plastid | 17.5 | 8.19 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:3.2.2.4.6 | EntrezGene:833975 | UniProt:A0A1R7T3C8 | InterPro:AMPK1_CBM | ProteinID:ANM71125.1 |
| ArrayExpress:AT5G39790 | EnsemblPlantsGene:AT5G39790 | RefSeq:AT5G39790 | TAIR:AT5G39790 | RefSeq:AT5G39790-TAIR-G | EnsemblPlants:AT5G39790.3 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009569 | GO:GO:0009570 | GO:GO:0009987 | GO:GO:0010581 |
| GO:GO:0019252 | GO:GO:0030246 | GO:GO:0030247 | GO:GO:2001070 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:Ig_E-set | RefSeq:NP_001332676.1 | PFAM:PF16561 | PANTHER:PTHR10343 | PANTHER:PTHR10343:SF61 | SUPFAM:SSF81296 |
| UniParc:UPI0008487FFC | SEG:seg | : | : | : | : |
Description
5'-AMP-activated protein kinase-related [Source:TAIR;Acc:AT5G39790]
Coordinates
chr5:-:15932557..15935270
Molecular Weight (calculated)
31871.5 Da
IEP (calculated)
7.556
GRAVY (calculated)
-0.274
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCVPRIEFG CSSQSLTLSW NLRAWNLCRL NTISHFQKLP YPLVASTRKH YKNSLLLKRF LVGVGTEESS LSEDLLDESL SRPLTSDELK SLLIDTERSK
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE
101: LVKKLSEANQ QNRFLKRQVL VFKTQEHEIT NIKTELALME LEVQALVKLA EEIANLGIPQ GSRKISGKYI QSHLLSRLDA VQKKMKEQIK GVEAAQSKEV
201: HVFWIGMAES VQVMGSFDGW SQREDLSPEY SALFTKFSTT LFLRPGRYEM KFLVDGEWQI SPEFPTSGEG LMENNVLVVE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.