Factsheet for PGSC0003DMT400021557

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078500.1.1	Tomato	extracellular	38.27	89.42
VIT_08s0007g07680.t01	Wine grape	extracellular, plasma membrane, vacuole	68.31	69.75
PGSC0003DMT400048461	Potato	extracellular	63.37	64.44
GSMUA_Achr11P...	Banana	plasma membrane	59.26	60.5
TraesCS4A01G180200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.26	59.5
TraesCS4B01G137500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.67	59.43
TraesCS4D01G132200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	59.26	59.02
EES19498	Sorghum	plasma membrane	58.02	58.02
Os01t0182200-02	Rice	endoplasmic reticulum, plasma membrane	58.02	57.32
Zm00001d010325_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	56.38	56.38
EES08298	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	55.14	54.47
Zm00001d048959_P002	Maize	endoplasmic reticulum, extracellular, vacuole	51.03	52.77
KRH56152	Soybean	extracellular	46.91	47.7
KRH25362	Soybean	endoplasmic reticulum, extracellular, plasma membrane	46.91	47.7
Zm00001d032015_P001	Maize	plastid	31.28	30.4
Zm00001d044543_P001	Maize	plastid	31.28	30.04
Zm00001d017903_P001	Maize	cytosol	34.16	19.62

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102587350	MapMan:24.3.1.4	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1AFB3	InterPro:MIP	PFAM:PF00230
EnsemblPlantsGene:PGSC0003DMG400008358	PGSC:PGSC0003DMG400008358	EnsemblPlants:PGSC0003DMT400021557	PRINTS:PR00783	PANTHER:PTHR19139	PANTHER:PTHR19139:SF75
SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI000294FADC	RefSeq:XP_006362261.1	SEG:seg	:

Description

Small basic intrinsic protein 1-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400008358]

Coordinates

chr10:+:59186184..59191872

Molecular Weight (calculated)

25719.1 Da

IEP (calculated)

10.236

GRAVY (calculated)

0.814

Length

243 amino acids

Sequence
(BLAST)

001: MGVVKAAVAD FVMTFIAIFC VSTIGVLTYI IGSAFGIAPG LASLSITIVI VFLLFLMLSV IAEALGGAAF NPAGTAAFYA AGVGNDSLFS VAARFPAQAA
101: GAVAGAVAIL EVIPTQYKHM LGGPSLKVDL HNGAIAEGIL TFVMTFLVFI IVLKGPKSAL LKNWLLAMST VTMVVAGSKY TGPSMNPANA FGWAYINNMH
201: NTWEQFYVYW ICPFVGAILA AWTFRAVFPA PAKKKKPQKK KRN

Best Arabidopsis Sequence Match ( AT3G04090.1 )
(BLAST)

001: MMGVLKSAIG DMLMTFSWVV LSATFGIQTA AIISAGDFQA ITWAPLVILT SLIFVYVSIF TVIFGSASFN PTGSAAFYVA GVPGDTLFSL AIRLPAQAIG
101: AAGGALAIME FIPEKYKHMI GGPSLQVDVH TGAIAETILS FGITFAVLLI ILRGPRRLLA KTFLLALATI SFVVAGSKYT GPAMNPAIAF GWAYMYSSHN
201: TWDHIYVYWI SSFVGALSAA LLFRSIFPPP RPQKKKQKKA

Arabidopsis Description

SIP1-1SIP1A [Source:UniProtKB/TrEMBL;Acc:A0A178V5Y6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.