CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56152	Soybean	extracellular	92.05	92.05
VIT_08s0007g07680.t01	Wine grape	extracellular, plasma membrane, vacuole	54.39	54.62
KRG94774	Soybean	plasma membrane	53.14	51.21
KRH06755	Soybean	plasma membrane	52.72	50.81
GSMUA_Achr11P...	Banana	plasma membrane	49.79	50.0
PGSC0003DMT400048461	Potato	extracellular	49.79	49.79
TraesCS4A01G180200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.21	49.59
Solyc10g078490.1.1	Tomato	nucleus	50.21	49.38
EES19498	Sorghum	plasma membrane	49.79	48.97
Zm00001d010325_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	49.79	48.97
TraesCS4B01G137500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	49.79	48.77
TraesCS4D01G132200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	49.37	48.36
Solyc12g019690.1.1	Tomato	extracellular, plasma membrane, vacuole	48.95	48.35
KRH08462	Soybean	extracellular, plasma membrane, vacuole	49.37	48.16
KRH70120	Soybean	extracellular, plasma membrane, vacuole	49.37	47.77
Os01t0182200-02	Rice	endoplasmic reticulum, plasma membrane	48.95	47.56
PGSC0003DMT400021557	Potato	endoplasmic reticulum, plasma membrane, vacuole	47.7	46.91
Zm00001d048959_P002	Maize	endoplasmic reticulum, extracellular, vacuole	45.19	45.96
EES08298	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	47.28	45.94
Solyc10g078500.1.1	Tomato	extracellular	15.9	36.54
KRH66640	Soybean	extracellular	31.8	33.04
KRG95000	Soybean	extracellular	30.96	31.36
Zm00001d044543_P001	Maize	plastid	28.03	26.48
Zm00001d032015_P001	Maize	plastid	27.62	26.4
Zm00001d017903_P001	Maize	cytosol	30.13	17.02

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100775829	MapMan:24.3.1.4	EMBL:ACUP02007246	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EMBL:BT096183	UniProt:C6TF06	EnsemblPlantsGene:GLYMA_12G097800	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150
GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085
InterPro:IPR023271	EnsemblPlants:KRH25362	ProteinID:KRH25362	ProteinID:KRH25362.1	InterPro:MIP	PFAM:PF00230
PRINTS:PR00783	PANTHER:PTHR19139	PANTHER:PTHR19139:SF75	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI0001B16E7C

Description

hypothetical protein

Coordinates

chr12:+:8402584..8403512

Molecular Weight (calculated)

26022.4 Da

IEP (calculated)

10.530

GRAVY (calculated)

0.654

Length

239 amino acids

Sequence
(BLAST)

001: MGWIKAAIGD AILTSMWVFI ISTLRIVTTE ITVFLGLQPF FLAGLIISTI LNSIYVLTIS FIGRILGGVS FNPSTSLSFY TAGLRPDSSL SSMAVRFPAQ
101: AYGGAVGIKT LLLVMPSHYK DMLKGPFLKV DLHSGAVAEG LLTFIHNMAI FFVMFKGPRN PFVKVYLLSV TTAALAILGG GFTGPSMNPA NAFGWAFVNN
201: KHNTWEQFYV YWIGPFIGAS SAALIFRSMF MPPIKQKKA

Best Arabidopsis Sequence Match ( AT3G04090.1 )
(BLAST)

001: MMGVLKSAIG DMLMTFSWVV LSATFGIQTA AIISAGDFQA ITWAPLVILT SLIFVYVSIF TVIFGSASFN PTGSAAFYVA GVPGDTLFSL AIRLPAQAIG
101: AAGGALAIME FIPEKYKHMI GGPSLQVDVH TGAIAETILS FGITFAVLLI ILRGPRRLLA KTFLLALATI SFVVAGSKYT GPAMNPAIAF GWAYMYSSHN
201: TWDHIYVYWI SSFVGALSAA LLFRSIFPPP RPQKKKQKKA

Arabidopsis Description

SIP1-1SIP1A [Source:UniProtKB/TrEMBL;Acc:A0A178V5Y6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.