Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19498 | Sorghum | plasma membrane | 95.47 | 95.47 |
| TraesCS4B01G137500.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 83.95 | 83.61 |
| TraesCS4A01G180200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 83.13 | 83.47 |
| Os01t0182200-02 | Rice | endoplasmic reticulum, plasma membrane | 83.95 | 82.93 |
| TraesCS4D01G132200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 83.13 | 82.79 |
| Zm00001d048959_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 71.19 | 73.62 |
| GSMUA_Achr11P... | Banana | plasma membrane | 65.84 | 67.23 |
| VIT_08s0007g07680.t01 | Wine grape | extracellular, plasma membrane, vacuole | 62.96 | 64.29 |
| KRG94774 | Soybean | plasma membrane | 62.96 | 61.69 |
| KRH06755 | Soybean | plasma membrane | 62.96 | 61.69 |
| Solyc10g078490.1.1 | Tomato | nucleus | 58.44 | 58.44 |
| PGSC0003DMT400048461 | Potato | extracellular | 55.56 | 56.49 |
| PGSC0003DMT400021557 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 56.38 | 56.38 |
| KRH08462 | Soybean | extracellular, plasma membrane, vacuole | 56.38 | 55.92 |
| KRH70120 | Soybean | extracellular, plasma membrane, vacuole | 56.79 | 55.87 |
| Solyc12g019690.1.1 | Tomato | extracellular, plasma membrane, vacuole | 54.73 | 54.96 |
| CDY50883 | Canola | extracellular, plasma membrane | 51.85 | 52.72 |
| CDY42904 | Canola | plasma membrane | 51.85 | 52.72 |
| Bra031946.1-P | Field mustard | extracellular, plasma membrane | 51.85 | 52.72 |
| AT3G04090.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 51.85 | 52.5 |
| Bra040150.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 53.5 | 51.18 |
| KRH56152 | Soybean | extracellular | 49.38 | 50.21 |
| KRH25362 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 48.97 | 49.79 |
| CDY38504 | Canola | endoplasmic reticulum, extracellular, vacuole | 47.74 | 47.74 |
| Bra002151.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 47.74 | 47.74 |
| CDY66671 | Canola | endoplasmic reticulum, extracellular, vacuole | 47.74 | 47.74 |
| AT5G18290.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 46.91 | 46.91 |
| Solyc10g078500.1.1 | Tomato | extracellular | 18.93 | 44.23 |
| Zm00001d032015_P001 | Maize | plastid | 44.86 | 43.6 |
| Zm00001d044543_P001 | Maize | plastid | 44.44 | 42.69 |
| Zm00001d028951_P001 | Maize | plasma membrane | 32.92 | 32.13 |
| Zm00001d017903_P001 | Maize | cytosol | 46.91 | 26.95 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.4 | EntrezGene:541892 | EMBL:AF326498 | ProteinID:AQK93888.1 | InterPro:Aquaporin-like |
| InterPro:Aquaporin_transptr | EMBL:BT088172 | UniProt:C4JBH5 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | PFAM:PF00230 | PRINTS:PR00783 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF75 |
| UniProt:Q9ATM2 | SUPFAM:SSF81338 | TMHMM:TMhelix | UniParc:UPI00000A5653 | EnsemblPlantsGene:Zm00001d010325 | EnsemblPlants:Zm00001d010325_P001 |
| EnsemblPlants:Zm00001d010325_T001 | SEG:seg | : | : | : | : |
Description
small basic membrane intrinsic protein1b small basic membrane intrinsic protein1b
Coordinates
chr8:-:109745230..109750097
Molecular Weight (calculated)
25704.9 Da
IEP (calculated)
9.461
GRAVY (calculated)
0.794
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMGEALRAA AADAVVTFLW VLCVSTLGAS TTAVTSYLRL QGVHFALLVT VSLLSVLLFV FNILCDALGG ASFNPTGVAA FYAAGVTSPS LFSIALRLPA
101: QAAGAVGGAL AISELMPAQY RHMLGGPSLK VDPHTGAGAE LVLTFVITLA VLLIIVKGPR NPIIKTWMIS ICTLCLVLSG AAYTGPSMNP ANAFGWAYVN
201: NRHNTWEQFY VYWICPFIGA ILAAWIFRAM FLTPPPKPKA KKA
101: QAAGAVGGAL AISELMPAQY RHMLGGPSLK VDPHTGAGAE LVLTFVITLA VLLIIVKGPR NPIIKTWMIS ICTLCLVLSG AAYTGPSMNP ANAFGWAYVN
201: NRHNTWEQFY VYWICPFIGA ILAAWIFRAM FLTPPPKPKA KKA
001: MMGVLKSAIG DMLMTFSWVV LSATFGIQTA AIISAGDFQA ITWAPLVILT SLIFVYVSIF TVIFGSASFN PTGSAAFYVA GVPGDTLFSL AIRLPAQAIG
101: AAGGALAIME FIPEKYKHMI GGPSLQVDVH TGAIAETILS FGITFAVLLI ILRGPRRLLA KTFLLALATI SFVVAGSKYT GPAMNPAIAF GWAYMYSSHN
201: TWDHIYVYWI SSFVGALSAA LLFRSIFPPP RPQKKKQKKA
101: AAGGALAIME FIPEKYKHMI GGPSLQVDVH TGAIAETILS FGITFAVLLI ILRGPRRLLA KTFLLALATI SFVVAGSKYT GPAMNPAIAF GWAYMYSSHN
201: TWDHIYVYWI SSFVGALSAA LLFRSIFPPP RPQKKKQKKA
Arabidopsis Description
SIP1-1SIP1A [Source:UniProtKB/TrEMBL;Acc:A0A178V5Y6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.