Factsheet for Solyc10g078490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07680.t01	Wine grape	extracellular, plasma membrane, vacuole	71.6	73.11
GSMUA_Achr11P...	Banana	plasma membrane	62.14	63.45
Solyc12g019690.1.1	Tomato	extracellular, plasma membrane, vacuole	62.55	62.81
Solyc10g078500.1.1	Tomato	extracellular	26.75	62.5
TraesCS4A01G180200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.08	60.33
TraesCS4B01G137500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.49	60.25
TraesCS4D01G132200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	60.08	59.84
EES19498	Sorghum	plasma membrane	59.67	59.67
Os01t0182200-02	Rice	endoplasmic reticulum, plasma membrane	59.67	58.94
Zm00001d010325_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	58.44	58.44
EES08298	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	55.97	55.28
Zm00001d048959_P002	Maize	endoplasmic reticulum, extracellular, vacuole	52.26	54.04
KRH56152	Soybean	extracellular	49.79	50.63
KRH25362	Soybean	endoplasmic reticulum, extracellular, plasma membrane	49.38	50.21
Solyc01g056720.2.1	Tomato	endoplasmic reticulum, extracellular	28.81	32.41
Zm00001d032015_P001	Maize	plastid	33.33	32.4
Zm00001d044543_P001	Maize	plastid	32.92	31.62
Zm00001d017903_P001	Maize	cytosol	35.8	20.57

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.4	EMBL:AB845634	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	UniProt:K4D291	InterPro:MIP	PFAM:PF00230
PRINTS:PR00783	PANTHER:PTHR19139	PANTHER:PTHR19139:SF75	SUPFAM:SSF81338	EnsemblPlantsGene:Solyc10g078490.1	EnsemblPlants:Solyc10g078490.1.1
TMHMM:TMhelix	UniParc:UPI0001B34C18	SEG:seg	:	:	:

Description

Small basic intrinsic protein 12 [Source:UniProtKB/TrEMBL;Acc:K4D291]

Coordinates

chr10:-:60298772..60302378

Molecular Weight (calculated)

26005.4 Da

IEP (calculated)

10.313

GRAVY (calculated)

0.705

Length

243 amino acids

Sequence
(BLAST)

001: MGAVKAAVGD FVLTLMWVFC SSTLGIFTYL IATAFGIAQG MASLFITTVL LFMLFFVFGI IGDALGGAAF NPAGTAAFYA AGVGKDSLFT VATRFPAQAA
101: GAVAGAVAIL EVIPTQYKHM LGGPSLKVDL HNGAIAEGIL TFVMTFLVFI IVLKGPKSAL LKNWLLAMST VTMVVAGSKY TGPSMNPANA FGWAYINNMH
201: NTWEQFYVYW ICPFVGAIMA AWTFRAVFPA PAKKKKPQKK KRN

Best Arabidopsis Sequence Match ( AT5G18290.2 )
(BLAST)

001: MSAVKSALGD MVITFLWVIL SATFGIQTAA IVSAVGFHGI TWAPLVISTL VVFVSISIFT VIGNVLGGAS FNPCGNAAFY TAGVSSDSLF SLAIRSPAQA
101: IGAAGGAITI MEMIPEKYKT RIGGKPSLQF GAHNGAISEV VLSFSVTFLV LLIILRGPRK LLAKTFLLAL ATVSVFVVGS KFTRPFMNPA IAFGWAYIYK
201: SHNTWDHFYV YWISSYTGAI LSAMLFRIIF PAPPLVQKKQ KKA

Arabidopsis Description

SIP1-2Probable aquaporin SIP1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK43]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.