Factsheet for VIT_08s0007g07680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

nucleus 1
plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078490.1.1	Tomato	nucleus	73.11	71.6
PGSC0003DMT400021557	Potato	endoplasmic reticulum, plasma membrane, vacuole	69.75	68.31
GSMUA_Achr11P...	Banana	plasma membrane	67.65	67.65
EES19498	Sorghum	plasma membrane	65.55	64.2
Zm00001d010325_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	64.29	62.96
PGSC0003DMT400048461	Potato	extracellular	63.03	62.76
TraesCS4A01G180200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	63.45	62.4
TraesCS4B01G137500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	63.45	61.89
TraesCS4D01G132200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	63.03	61.48
Solyc12g019690.1.1	Tomato	extracellular, plasma membrane, vacuole	60.92	59.92
Os01t0182200-02	Rice	endoplasmic reticulum, plasma membrane	61.76	59.76
Zm00001d048959_P002	Maize	endoplasmic reticulum, extracellular, vacuole	57.56	58.3
EES08298	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	59.24	57.32
KRH56152	Soybean	extracellular	55.46	55.23
Solyc10g078500.1.1	Tomato	extracellular	23.95	54.81
KRH25362	Soybean	endoplasmic reticulum, extracellular, plasma membrane	54.62	54.39
Zm00001d032015_P001	Maize	plastid	36.97	35.2
Zm00001d044543_P001	Maize	plastid	37.4	35.18
VIT_08s0040g00400.t01	Wine grape	endoplasmic reticulum	30.67	30.29
Zm00001d017903_P001	Maize	cytosol	39.5	22.22

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100232979	wikigene:100232979	MapMan:24.3.1.4	ProteinID:ABD46741	ProteinID:ABD46741.1
EMBL:AM479429	EMBL:AM480690	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	ProteinID:CAN70854	ProteinID:CAN70854.1
ProteinID:CAN79588	ProteinID:CAN79588.1	ProteinID:CCB55182	ProteinID:CCB55182.1	EMBL:DQ086835	EMBL:FN595991
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887
GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	EntrezGene:LOC100232979	wikigene:LOC100232979
InterPro:MIP	RefSeq:NP_001267877.1	PFAM:PF00230	PRINTS:PR00783	PANTHER:PTHR19139	PANTHER:PTHR19139:SF75
UniProt:Q107W9	SUPFAM:SSF81338	TIGR:TC63843	TMHMM:TMhelix	UniParc:UPI0000DA845B	ArrayExpress:VIT_08s0007g07680
EnsemblPlantsGene:VIT_08s0007g07680	EnsemblPlants:VIT_08s0007g07680.t01	SEG:seg	:	:	:

Description

Small basic intrinsic protein 1 [Source:UniProtKB/TrEMBL;Acc:Q107W9]

Coordinates

chr8:-:21138702..21144717

Molecular Weight (calculated)

25186.3 Da

IEP (calculated)

9.406

GRAVY (calculated)

0.922

Length

238 amino acids

Sequence
(BLAST)

001: MGVIKAAIGD GVLTFMWVFC VSTVGIFTSL ISSALGVQAL PLAAIFITTV LIFVLVFVFS AIGDVLGGAS FNPTATAALY AAGVTPDSLI SMAFRFPAQA
101: AGAVGGALAI MEVMPTQYKH MLGGPSLKVD LHTGAIAEGI LTFTISFLVL LVVLKGPKSP VLKTWLLAMA TVTLVVSGSA YTGPSMNPAN AFGWAYINNW
201: HNTWDQLYVY WICPFIGAIL AAWVFRFLFP APTKQKKA

Best Arabidopsis Sequence Match ( AT3G04090.1 )
(BLAST)

001: MMGVLKSAIG DMLMTFSWVV LSATFGIQTA AIISAGDFQA ITWAPLVILT SLIFVYVSIF TVIFGSASFN PTGSAAFYVA GVPGDTLFSL AIRLPAQAIG
101: AAGGALAIME FIPEKYKHMI GGPSLQVDVH TGAIAETILS FGITFAVLLI ILRGPRRLLA KTFLLALATI SFVVAGSKYT GPAMNPAIAF GWAYMYSSHN
201: TWDHIYVYWI SSFVGALSAA LLFRSIFPPP RPQKKKQKKA

Arabidopsis Description

SIP1-1SIP1A [Source:UniProtKB/TrEMBL;Acc:A0A178V5Y6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.