Factsheet for PGSC0003DMT400048461

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g019690.1.1	Tomato	extracellular, plasma membrane, vacuole	93.31	92.15
PGSC0003DMT400021557	Potato	endoplasmic reticulum, plasma membrane, vacuole	64.44	63.37
VIT_08s0007g07680.t01	Wine grape	extracellular, plasma membrane, vacuole	62.76	63.03
TraesCS4A01G180200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	58.16	57.44
TraesCS4B01G137500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	58.16	56.97
TraesCS4D01G132200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.74	56.56
EES19498	Sorghum	plasma membrane	56.9	55.97
GSMUA_Achr11P...	Banana	plasma membrane	55.65	55.88
Zm00001d010325_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	56.49	55.56
Os01t0182200-02	Rice	endoplasmic reticulum, plasma membrane	53.56	52.03
Zm00001d048959_P002	Maize	endoplasmic reticulum, extracellular, vacuole	50.63	51.49
KRH56152	Soybean	extracellular	50.21	50.21
EES08298	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	51.46	50.0
KRH25362	Soybean	endoplasmic reticulum, extracellular, plasma membrane	49.79	49.79
Zm00001d044543_P001	Maize	plastid	33.05	31.23
Zm00001d032015_P001	Maize	plastid	32.64	31.2
Zm00001d017903_P001	Maize	cytosol	35.98	20.33

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.4	ProteinID:AFD96388	ProteinID:AFD96388.1	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	EMBL:JQ088284
UniProt:M1BMG5	InterPro:MIP	PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400018823	PGSC:PGSC0003DMG400018823	EnsemblPlants:PGSC0003DMT400048461
PRINTS:PR00783	PANTHER:PTHR19139	PANTHER:PTHR19139:SF75	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI000294E9C6
SEG:seg	:	:	:	:	:

Description

Small basic intrinsic protein 1-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400018823]

Coordinates

chr12:+:22963729..22968070

Molecular Weight (calculated)

25736.6 Da

IEP (calculated)

6.670

GRAVY (calculated)

0.749

Length

239 amino acids

Sequence
(BLAST)

001: MGVIKSAIAD GLLTFLWVFC SSNIGVSTYF IASYFGVANE IASLFITTLI VFLIFLVFGF LGDVLGGAGF NPTGNAAFYA AGLGDDSLVS AAVRCPAQVV
101: GAVAGSLALM ELMPKHYHHM LDGPALKVDV QTGAIAEGVL TFVITFMIFV IVLRGPESTL LKNLLLTMVT LPLVLAGSNY TGPSMNPANA FGWAYLSNTH
201: NTWEHFYVYW ISPFIGAILA AWIFRALFPP PVEQKQKRN

Best Arabidopsis Sequence Match ( AT3G04090.1 )
(BLAST)

001: MMGVLKSAIG DMLMTFSWVV LSATFGIQTA AIISAGDFQA ITWAPLVILT SLIFVYVSIF TVIFGSASFN PTGSAAFYVA GVPGDTLFSL AIRLPAQAIG
101: AAGGALAIME FIPEKYKHMI GGPSLQVDVH TGAIAETILS FGITFAVLLI ILRGPRRLLA KTFLLALATI SFVVAGSKYT GPAMNPAIAF GWAYMYSSHN
201: TWDHIYVYWI SSFVGALSAA LLFRSIFPPP RPQKKKQKKA

Arabidopsis Description

SIP1-1SIP1A [Source:UniProtKB/TrEMBL;Acc:A0A178V5Y6]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.