Factsheet for PGSC0003DMT400037638

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g068250.2.1	Tomato	cytosol	66.38	91.23
CDX75275	Canola	cytosol	36.72	60.51
Bra011374.1-P	Field mustard	peroxisome	36.72	58.84
GSMUA_Achr10P...	Banana	plastid	41.38	43.64
GSMUA_Achr7P14330_001	Banana	plasma membrane	31.55	41.88
KRH62013	Soybean	plastid	39.83	41.85
PGSC0003DMT400038554	Potato	nucleus, plastid	35.52	41.7
PGSC0003DMT400006515	Potato	plastid	42.07	41.5
PGSC0003DMT400001024	Potato	plastid	49.83	41.46
GSMUA_Achr7P14350_001	Banana	plasma membrane	31.9	40.75
PGSC0003DMT400040010	Potato	nucleus, plastid	43.97	39.66
KRH52669	Soybean	plastid	45.0	38.78
PGSC0003DMT400026193	Potato	plastid	42.24	35.92
CDX68882	Canola	plastid	43.45	35.85
PGSC0003DMT400045839	Potato	cytosol, plastid	43.97	35.03
AT4G32710.1	Thale cress	plastid	44.14	35.02
PGSC0003DMT400062758	Potato	nucleus	42.93	34.78
PGSC0003DMT400001868	Potato	nucleus, plastid	40.52	34.46
PGSC0003DMT400019290	Potato	mitochondrion	38.62	32.18
PGSC0003DMT400064597	Potato	plastid	39.14	30.47
PGSC0003DMT400041343	Potato	plastid	38.45	30.18
PGSC0003DMT400083900	Potato	cytosol, nucleus, peroxisome	27.07	26.88
PGSC0003DMT400024762	Potato	cytosol, plasma membrane, plastid	27.59	23.95
PGSC0003DMT400006664	Potato	cytosol	29.66	23.34
PGSC0003DMT400008513	Potato	cytosol, plasma membrane, plastid	24.31	22.0
PGSC0003DMT400008632	Potato	mitochondrion	24.83	20.11

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102592261	MapMan:18.4.1.22	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1B5N0
PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG402014514	PGSC:PGSC0003DMG402014514	EnsemblPlants:PGSC0003DMT400037638	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF89	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000296AFEF	RefSeq:XP_006356649.2	SEG:seg

Description

PERK1 kinase [Source:PGSC_GENE;Acc:PGSC0003DMG402014514]

Coordinates

chr8:-:43141824..43151367

Molecular Weight (calculated)

63652.2 Da

IEP (calculated)

8.793

GRAVY (calculated)

-0.242

Length

580 amino acids

Sequence
(BLAST)

001: MHFSLHSITP MHPHSPFPSP SSEAKNGITS RAIPKPPPTV INFTHSPLPP SPSSPNASLK PIIKPIDDKI ALHPPPRRPI YTHPLPKLLP KLTLPPPPVT
101: ALMFPVNGSS APVSRDETSS IKVQSPLSSA SIGSVIGISV GVTGAFFIVA IILFVCCRNK LKCGKLRDRE SPLPKDDLYH VLRQSFRQQN VANGSPVSPK
201: QVTPFRPLHF FDNNAHSNSL NSEAGSHFSP KDHIVDLAVS GGNFTYEELW LATSGFSTSN LLGEGGFGYV HKGVLPTGRE IAVKQLKVGS HQGEREFQAE
301: VETISRVHHK HLVSLVGYCM NGTKRLLVYE FVSNRTLEYH LHGEAQSTMK WASRMKIAIG SAKGLAYLHE DCNPTIIHRD IKAANILLDS NFEAKVADFG
401: LAKFLSDSNH HVSHISTRVV GTFGYLAPEY AQSGKTSDKS DIFSFGVMLL ELITGRPPII STESSACSSL VIWARPLLRS ALDDGKLDAL VDPCLGQNYN
501: SEEMANMIAC AAACVRHSSR RRPRMSQVVR ALEGDAFILD LDEENRPGQS TICDFDSDGS NYFEKFKKIQ RSTLKSKEEW

Best Arabidopsis Sequence Match ( AT1G52290.1 )
(BLAST)

001: MSTDTIPSLS SPPAPEFPST TPDTATSPAP SQPSIIGPSS LAPFPETTTN IDGGSRNVAL TGLITGVVLG ATFVLLGVCI FVCFYKRKKR KLKKKKKEDI
101: EASINRDSLD PKDDSNNLQQ WSSSEIGQNL FTYEDLSKAT SNFSNTNLLG QGGFGYVHRG VLVDGTLVAI KQLKSGSGQG EREFQAEIQT ISRVHHRHLV
201: SLLGYCITGA QRLLVYEFVP NKTLEFHLHE KERPVMEWSK RMKIALGAAK GLAYLHEDCN PKTIHRDVKA ANILIDDSYE AKLADFGLAR SSLDTDTHVS
301: TRIMGTFGYL APEYASSGKL TEKSDVFSIG VVLLELITGR RPVDKSQPFA DDDSIVDWAK PLMIQALNDG NFDGLVDPRL ENDFDINEMT RMVACAAASV
401: RHSAKRRPKM SQIVRAFEGN ISIDDLTEGA APGQSTIYSL DGSSDYSSTQ YKEDLKKFKK MAFESKTFGS SECSGLTSDN GQNPSGSSSI TEGQRTTQEI
501: EPEKNTKDT

Arabidopsis Description

PERK15Proline-rich receptor-like protein kinase PERK15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C821]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.