Factsheet for PGSC0003DMT400040010

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062790.2.1	Tomato	nucleus	94.71	93.12
VIT_04s0023g01570.t01	Wine grape	nucleus	43.39	61.73
PGSC0003DMT400038554	Potato	nucleus, plastid	46.81	60.93
GSMUA_Achr7P26790_001	Banana	plastid	38.1	56.19
PGSC0003DMT400045839	Potato	cytosol, plastid	62.99	55.63
Zm00001d028337_P003	Maize	nucleus	48.06	53.0
KXG39820	Sorghum	plastid	46.19	51.92
Zm00001d030218_P003	Maize	plastid	44.63	51.53
KRH76796	Soybean	nucleus, plastid	50.7	51.42
EER91832	Sorghum	plastid	44.48	51.35
Bra039607.1-P	Field mustard	nucleus	48.21	50.82
CDY65603	Canola	plastid	48.68	50.65
GSMUA_Achr5P02090_001	Banana	nucleus	46.19	50.51
KRH28656	Soybean	nucleus, plastid	49.46	50.32
KRH08293	Soybean	nucleus	46.66	50.08
AT2G18470.3	Thale cress	plastid	49.3	50.08
CDY71995	Canola	nucleus, plastid	32.97	49.53
GSMUA_Achr4P32080_001	Banana	plastid	47.43	49.51
Os10t0104800-01	Rice	plastid	43.7	49.47
CDY59546	Canola	plastid	33.44	49.31
KRH69932	Soybean	plastid	46.35	49.01
TraesCS4B01G233600.1	Wheat	nucleus, plastid	46.97	48.87
TraesCS4A01G077500.1	Wheat	nucleus	47.12	48.79
GSMUA_Achr7P00830_001	Banana	plastid	46.5	48.7
HORVU0Hr1G013830.4	Barley	plastid	42.61	48.41
Zm00001d034257_P002	Maize	plastid	43.7	47.95
PGSC0003DMT400001024	Potato	plastid	51.94	47.92
GSMUA_Achr4P10790_001	Banana	plastid	47.28	47.72
HORVU2Hr1G061030.8	Barley	plastid	39.5	47.65
EER90803	Sorghum	plastid	44.63	47.6
TraesCS5A01G411300.1	Wheat	plastid	42.3	47.47
PGSC0003DMT400006515	Potato	plastid	41.21	45.07
GSMUA_Achr4P03200_001	Banana	mitochondrion, plasma membrane	47.59	45.07
EER97954	Sorghum	plastid	39.97	44.93
TraesCS5B01G415000.1	Wheat	plastid	42.46	44.54
Os07t0137800-00	Rice	plasma membrane	37.01	44.24
PGSC0003DMT400037638	Potato	plastid	39.66	43.97
PGSC0003DMT400062758	Potato	nucleus	48.21	43.3
Zm00001d007848_P001	Maize	mitochondrion, plastid	40.59	42.93
PGSC0003DMT400001868	Potato	nucleus, plastid	44.95	42.38
PGSC0003DMT400026193	Potato	plastid	42.77	40.32
PGSC0003DMT400019290	Potato	mitochondrion	39.35	36.35
PGSC0003DMT400041343	Potato	plastid	41.21	35.86
PGSC0003DMT400064597	Potato	plastid	40.9	35.3
Bra037220.1-P	Field mustard	nucleus	48.06	33.73
CDY66134	Canola	nucleus	47.59	33.26
CDY51224	Canola	plastid	48.06	32.66
HORVU4Hr1G065270.7	Barley	cytosol	24.73	32.32
PGSC0003DMT400083900	Potato	cytosol, nucleus, peroxisome	24.88	27.4
PGSC0003DMT400024762	Potato	cytosol, plasma membrane, plastid	25.51	24.55
PGSC0003DMT400006664	Potato	cytosol	27.37	23.88
PGSC0003DMT400008513	Potato	cytosol, plasma membrane, plastid	22.55	22.62
PGSC0003DMT400008632	Potato	mitochondrion	23.33	20.95

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102604174	MapMan:18.4.1.22	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M1B952	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG400015476	PGSC:PGSC0003DMG400015476	EnsemblPlants:PGSC0003DMT400040010
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF192	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix
UniParc:UPI000295D028	RefSeq:XP_015164099.1	SEG:seg	:	:	:

Description

Somatic embryogenesis receptor kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400015476]

Coordinates

chr2:-:21191206..21194574

Molecular Weight (calculated)

68884.0 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.693

Length

643 amino acids

Sequence
(BLAST)

001: MDSSPGTASS NDTDSKETPS SNGTPPSSSD SKNDSPSSSS SSSSSSPPPK NESPPSSPPP QSPPPSPNAS PPPKNDSPPP SSPPPSSSES NSSPSKDNNN
101: NNQSPNPSSN TPSQSPPPSS TYNTPSTPNS PKNPPSFLLF SPPPPASSRE SPAPPHAHLS PPPRSGSNQP SPANDDSSST VGIVAGIAVG GIVIIALIIL
201: CVWCSKRKKK QRYYMAPGPK GGDPYYNNNN QWNRRQSMDH VMKVPQSEMG TQSGWAGATP HQQGASSSGE FGSGYSGQAV PLPSQSPNMG LGGFSQSQFS
301: YEELAKATDG FSQANLLGQG GFGYVHKGVL NDGRVVAIKS LKAGSGQGER EFQAEVEIIS RVHHRHLVSL VGYCIANGQR MLVYEYVDNK TLEFHLHGKG
401: QPVMDWETRL KIALGSAKGL AYLHEDCQYR IIHRDIKAAN ILLDLNYEAL VADFGLAKLT SDNNTHVSTR VMGTFGYLAP EYASSGKLTE KSDVFSYGVM
501: LLELITAKKP VDPSNMMEDS LVDWARPLLT RALEEEKYDG LVDPRLEGNF DTDELHRMIG CAASSIRHSA KRRPKMSQIV RALEGNSSLE DLNDNPKPSK
601: VPSFAASNGA PTQSYDTGMY NADMMKFRKM IMPTQEFSSS PSE

Best Arabidopsis Sequence Match ( AT3G18810.1 )
(BLAST)

001: MAEGQSPENS PPSPTPPSPS SSDNQQQSSP PPSDSSSPSP PAPPPPDDSS NGSPQPPSSD SQSPPSPQGN NNNDGNNGNN NNDNNNNNNG NNNNDNNNGN
101: NKDNNNNGNN NNGNNNNGND NNGNNNNGNN NDNNNQNNGG GSNNRSPPPP SRNSDRNSPS PPRALAPPRS SGGGSNSSGN NEPNTAAIVG IVAGAGLLFL
201: VMILFCVCCC RKKKKKHQMP YYAGNGYATG KGDQYQQQQY NNQSDHVMNL SQQYPGSNGN NNWMNSPPPP PPGSWQPSPP PPPPPVSGGM NGNSSDFSSN
301: YSGPHGPSVP PPHPSVALGF NKSTFTYDEL AAATQGFSQS RLLGQGGFGY VHKGILPNGK EIAVKSLKAG SGQGEREFQA EVDIISRVHH RFLVSLVGYC
401: IAGGQRMLVY EFLPNDTLEF HLHGKSGKVL DWPTRLKIAL GSAKGLAYLH EDCHPRIIHR DIKASNILLD ESFEAKVADF GLAKLSQDNV THVSTRIMGT
501: FGYLAPEYAS SGKLTDRSDV FSFGVMLLEL VTGRRPVDLT GEMEDSLVDW ARPICLNAAQ DGDYSELVDP RLENQYEPHE MAQMVACAAA AVRHSARRRP
601: KMSQIVRALE GDATLDDLSE GGKAGQSSFL GRGSSSDYDS STYSADMKKF RKVALDSHEY GASSEYGNTS EYGLDPSSSS SEEIRRGGAN NNKTTPSRDH

Arabidopsis Description

PERK6Putative proline-rich receptor-like protein kinase PERK6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS95]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.