Factsheet for PGSC0003DMT400073093

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 9
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g072310.2.1	Tomato	plasma membrane	71.68	95.12
VIT_10s0003g01490.t01	Wine grape	plasma membrane	73.44	75.99
KRH11043	Soybean	plasma membrane	64.96	71.48
KRH21243	Soybean	plasma membrane	71.2	71.31
AT5G45780.1	Thale cress	plasma membrane	66.72	67.92
CDX77614	Canola	plasma membrane	66.56	67.75
Bra025056.1-P	Field mustard	plasma membrane	66.56	67.64
CDY39449	Canola	plasma membrane	66.24	67.32
Zm00001d037840_P001	Maize	cytosol	38.24	64.95
GSMUA_Achr6P00440_001	Banana	plasma membrane	62.08	64.67
Os02t0236100-01	Rice	plasma membrane	63.04	63.55
EES06565	Sorghum	plasma membrane	61.6	61.4
Zm00001d036887_P001	Maize	plasma membrane	26.88	61.31
Zm00001d016197_P001	Maize	vacuole	61.12	61.12
TraesCS6A01G156100.1	Wheat	plasma membrane	61.12	61.02
TraesCS6B01G184300.1	Wheat	plasma membrane	60.96	60.86
TraesCS6D01G146100.1	Wheat	plasma membrane	60.96	60.86
PGSC0003DMT400019924	Potato	cytosol	54.4	56.01
PGSC0003DMT400035086	Potato	plasma membrane	52.64	54.83
PGSC0003DMT400007454	Potato	plasma membrane	52.16	52.58
PGSC0003DMT400019446	Potato	plasma membrane	52.0	52.33
PGSC0003DMT400026062	Potato	plasma membrane	54.4	51.2
PGSC0003DMT400032797	Potato	cytosol, plasma membrane, plastid	41.76	50.39
PGSC0003DMT400045607	Potato	cytosol, plasma membrane, plastid	41.92	49.9
PGSC0003DMT400028991	Potato	plasma membrane	49.12	48.65
PGSC0003DMT400070819	Potato	plasma membrane	45.92	45.27
PGSC0003DMT400041690	Potato	plasma membrane	43.52	45.03
PGSC0003DMT400056093	Potato	plasma membrane	43.2	44.7
PGSC0003DMT400059959	Potato	plasma membrane	41.76	42.37
PGSC0003DMT400018244	Potato	plasma membrane	19.36	34.47
PGSC0003DMT400065173	Potato	plasma membrane	32.32	33.61

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.2	Gene3D:3.30.200.20	Gene3D:3.80.10.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	UniProt:M1CRI8	PFAM:PF00069
PFAM:PF08263	EnsemblPlantsGene:PGSC0003DMG400028429	PGSC:PGSC0003DMG400028429	EnsemblPlants:PGSC0003DMT400073093	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF104	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF52058	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000296A004
SEG:seg	:	:	:	:	:

Description

Leucine-rich repeat transmembrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028429]

Coordinates

chr2:+:31717683..31722637

Molecular Weight (calculated)

69491.9 Da

IEP (calculated)

7.656

GRAVY (calculated)

-0.057

Length

625 amino acids

Sequence
(BLAST)

001: MVTLLLIFSF FLHWVATTPA SMGFLSPKGV NYEVAALMSM KNRMRDEYHV LDGWDVNSVD PCTWYMVGCS SEGFVISLEM ASMGLSGTLS PSIGNLTHLR
101: TMLLQNNHLS GPIPAEIGQL TELLTLDLSG NQFVGGIPRA LGRLIYLNYL RLSRNRLSGQ IPKPVAYLSG LSFLDLSFNN LSGPTPKILA KDYSLYFGCC
201: RLSIAGNRFL CSALTTQICG GVPKPVNETS SDKRISNHHR WVVSVSIGVS CTFIVAVTLL VCWVHWYRSR VLTGYVQHDC EFATGHLKRF SFRELQIATG
301: NFSSKNIIGQ GGFGVVYKGY LPNRTVVAVK RLRDPSFTGE VQFQTEVEMI GLAVHRNLLR LYGFCTTPEE RLLIYPYMPN GSVADCLRDN GRDKPFLDWR
401: KRMHITLGAA RGLLYLHEQC NPKIIHRDVK AANILLDESF EAVVGDFGLA KLLDCRDSHV TTAVRGTIGH IAPEYLSTGQ SSEKTDVFGY GILLLELITG
501: HKALDAGIGQ GQKGTILDRV RNLFEEKKVE MLADRDLRGC FNAEELEKTV EVALQCTQSN PNNRPKMSEV LRILEGVTEQ MGHVDESQGG SNTCQTRAFS
601: FSRNFSDIHE ESSFTFEPIE LSGPR

Best Arabidopsis Sequence Match ( AT5G45780.1 )
(BLAST)

001: MEISLMKFLF LGIWVYYYSV LDSVSAMDSL LSPKGVNYEV AALMSVKNKM KDEKEVLSGW DINSVDPCTW NMVGCSSEGF VVSLEMASKG LSGILSTSIG
101: ELTHLHTLLL QNNQLTGPIP SELGQLSELE TLDLSGNRFS GEIPASLGFL THLNYLRLSR NLLSGQVPHL VAGLSGLSFL DLSFNNLSGP TPNISAKDYR
201: IVGNAFLCGP ASQELCSDAT PVRNATGLSE KDNSKHHSLV LSFAFGIVVA FIISLMFLFF WVLWHRSRLS RSHVQQDYEF EIGHLKRFSF REIQTATSNF
301: SPKNILGQGG FGMVYKGYLP NGTVVAVKRL KDPIYTGEVQ FQTEVEMIGL AVHRNLLRLF GFCMTPEERM LVYPYMPNGS VADRLRDNYG EKPSLDWNRR
401: ISIALGAARG LVYLHEQCNP KIIHRDVKAA NILLDESFEA IVGDFGLAKL LDQRDSHVTT AVRGTIGHIA PEYLSTGQSS EKTDVFGFGV LILELITGHK
501: MIDQGNGQVR KGMILSWVRT LKAEKRFAEM VDRDLKGEFD DLVLEEVVEL ALLCTQPHPN LRPRMSQVLK VLEGLVEQCE GGYEARAPSV SRNYSNGHEE
601: QSFIIEAIEL SGPR

Arabidopsis Description

Probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Source:UniProtKB/Swiss-Prot;Acc:C0LGU5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.