Factsheet for PGSC0003DMT400019924

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g039730.2.1	Tomato	plasma membrane	97.03	94.54
PGSC0003DMT400035086	Potato	plasma membrane	80.72	81.67
VIT_01s0127g00230.t01	Wine grape	plasma membrane	81.71	79.23
KRH74566	Soybean	plasma membrane	79.9	77.85
KRH69595	Soybean	plasma membrane	79.9	77.72
CDY46185	Canola	golgi, plasma membrane	77.1	73.58
HORVU4Hr1G029640.2	Barley	cytosol	29.98	73.09
CDY61508	Canola	cytosol	60.96	72.98
CDY61461	Canola	golgi, plasma membrane	76.28	72.91
GSMUA_Achr6P08840_001	Banana	plasma membrane	72.82	72.82
AT1G60800.1	Thale cress	plasma membrane	75.78	72.78
CDY44608	Canola	cytosol	60.79	72.78
HORVU6Hr1G074570.6	Barley	cytosol	43.16	72.78
Bra031479.1-P	Field mustard	endoplasmic reticulum, plasma membrane	64.74	72.24
GSMUA_Achr2P23200_001	Banana	plasma membrane	75.12	71.92
EES02381	Sorghum	golgi, plasma membrane, vacuole	74.3	71.14
Os01t0171000-01	Rice	plasma membrane	72.82	70.38
TraesCS3B01G106100.1	Wheat	plasma membrane	72.65	69.78
Zm00001d008724_P007	Maize	plasma membrane	72.16	69.52
HORVU3Hr1G016240.5	Barley	plasma membrane	72.49	69.4
TraesCS3D01G091000.2	Wheat	plasma membrane	72.32	69.24
Zm00001d039678_P002	Maize	plasma membrane	72.82	66.77
PGSC0003DMT400007454	Potato	plasma membrane	67.22	65.81
HORVU7Hr1G083870.7	Barley	cytosol	21.75	64.39
PGSC0003DMT400019446	Potato	plasma membrane	65.07	63.61
HORVU6Hr1G093140.1	Barley	mitochondrion, plastid	28.34	63.0
TraesCS3A01G091100.1	Wheat	plasma membrane	65.07	61.34
PGSC0003DMT400026062	Potato	plasma membrane	65.57	59.94
PGSC0003DMT400032797	Potato	cytosol, plasma membrane, plastid	47.94	56.18
PGSC0003DMT400028991	Potato	plasma membrane	58.32	56.1
PGSC0003DMT400045607	Potato	cytosol, plasma membrane, plastid	47.94	55.43
PGSC0003DMT400073093	Potato	plasma membrane	56.01	54.4
PGSC0003DMT400070819	Potato	plasma membrane	52.22	50.0
PGSC0003DMT400056093	Potato	plasma membrane	48.27	48.51
PGSC0003DMT400059959	Potato	plasma membrane	49.09	48.38
PGSC0003DMT400041690	Potato	plasma membrane	48.11	48.34
PGSC0003DMT400018244	Potato	plasma membrane	20.59	35.61
PGSC0003DMT400065173	Potato	plasma membrane	33.61	33.94

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.2	Gene3D:3.30.200.20	Gene3D:3.80.10.10	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:IPR001611	InterPro:IPR032675	InterPro:Kinase-like_dom_sf	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M1ACS7	PFAM:PF00069	PFAM:PF08263	PFAM:PF13855
EnsemblPlantsGene:PGSC0003DMG400007709	PGSC:PGSC0003DMG400007709	EnsemblPlants:PGSC0003DMT400019924	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF49	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF52058
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI000296A446	SEG:seg	:

Description

Leucine-rich repeat receptor-like kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400007709]

Coordinates

chr4:+:21713478..21719245

Molecular Weight (calculated)

67133.4 Da

IEP (calculated)

6.566

GRAVY (calculated)

-0.146

Length

607 amino acids

Sequence
(BLAST)

001: MESCYASLSP TGINYEVVAL IEIKKALHDP YNVLENWDVT SVDPCSWRMV TCSNDGYVSS LGLPSQSLSG TLSPGIGNLT KLESILLQNN AIYGPIPDVV
101: GNLEKLQTLD LSNNKFDGEI PASFGDLNNL NYLRLNNNSL TGTIPQSLSN IGGLALVDVS FNNLSGPLPK ISARAFKVIG NPLICGQSSG NNCSAVYPEP
201: LSFPPDSLGD QRAGSKNHHV AVAFGASFGA AFLVLVVIAL VLWWRYRHNQ QIFFDVNEQY DPEVCLGHLK RYVFKELRTA TDHFSSKNIL GSGGFGVVYK
301: GRLNNGTVVA VKRLKDYNAV GGEIQFQTEV ELISLAVHRN LLRLWGFCST ESERLLVYPY MPNGSVAARL KDHIHGRPVL DWSRRKGIAV GTARGLVYLH
401: EQCDPKIIHR DVKAANILLD EEFEAVVGDF GLAKLLDHRD SHVTTAVRGT VGHIAPEYLS TGQSSEKTDV FGFGILLLEL ITGQKAVDFG RGVNQKGVML
501: DWVKKLHAEK KLNLMVDKDL KNNFDRIELE EMVQVALLCT QFIPTYRPKM SEVLRMLEGD GLAEKWEASQ KVETPRYRTS ENTPKRYSDY IEESSLVVEA
601: MELSGPR

Best Arabidopsis Sequence Match ( AT1G60800.1 )
(BLAST)

001: MEGVRFVVWR LGFLVFVWFF DISSATLSPT GVNYEVTALV AVKNELNDPY KVLENWDVNS VDPCSWRMVS CTDGYVSSLD LPSQSLSGTL SPRIGNLTYL
101: QSVVLQNNAI TGPIPETIGR LEKLQSLDLS NNSFTGEIPA SLGELKNLNY LRLNNNSLIG TCPESLSKIE GLTLVDISYN NLSGSLPKVS ARTFKVIGNA
201: LICGPKAVSN CSAVPEPLTL PQDGPDESGT RTNGHHVALA FAASFSAAFF VFFTSGMFLW WRYRRNKQIF FDVNEQYDPE VSLGHLKRYT FKELRSATNH
301: FNSKNILGRG GYGIVYKGHL NDGTLVAVKR LKDCNIAGGE VQFQTEVETI SLALHRNLLR LRGFCSSNQE RILVYPYMPN GSVASRLKDN IRGEPALDWS
401: RRKKIAVGTA RGLVYLHEQC DPKIIHRDVK AANILLDEDF EAVVGDFGLA KLLDHRDSHV TTAVRGTVGH IAPEYLSTGQ SSEKTDVFGF GILLLELITG
501: QKALDFGRSA HQKGVMLDWV KKLHQEGKLK QLIDKDLNDK FDRVELEEIV QVALLCTQFN PSHRPKMSEV MKMLEGDGLA ERWEATQNGT GEHQPPPLPP
601: GMVSSSPRVR YYSDYIQESS LVVEAIELSG PR

Arabidopsis Description

NIK3Protein NSP-INTERACTING KINASE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZS4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.