Factsheet for PGSC0003DMT400076066

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075969	Potato	golgi, mitochondrion	67.09	48.31
Solyc08g069090.1.1	Tomato	mitochondrion	58.55	42.81
PGSC0003DMT400024024	Potato	cytosol	23.93	34.78
PGSC0003DMT400092406	Potato	cytosol	50.0	33.43
PGSC0003DMT400072002	Potato	mitochondrion	47.86	32.18
PGSC0003DMT400068616	Potato	cytosol, mitochondrion	23.5	31.98
PGSC0003DMT400090482	Potato	extracellular, mitochondrion, plasma membrane, plastid	20.51	26.52
PGSC0003DMT400083928	Potato	cytosol	22.65	26.37
PGSC0003DMT400038374	Potato	cytosol, mitochondrion, plasma membrane, plastid	30.77	25.62
KRH55299	Soybean	mitochondrion	25.64	24.29
PGSC0003DMT400067129	Potato	mitochondrion	24.36	23.27
PGSC0003DMT400024020	Potato	cytosol	27.35	22.3
VIT_12s0034g02540.t01	Wine grape	cytosol	31.2	22.19
KRH00952	Soybean	cytosol	26.92	21.72
KRH55302	Soybean	plasma membrane, plastid	25.64	20.34
KRH55037	Soybean	plasma membrane	26.07	20.33
PGSC0003DMT400067115	Potato	mitochondrion	24.79	20.0
PGSC0003DMT400065492	Potato	nucleus	30.34	19.94
PGSC0003DMT400052710	Potato	mitochondrion, plastid	26.92	19.94
PGSC0003DMT400052702	Potato	mitochondrion	28.21	19.41
PGSC0003DMT400038860	Potato	cytosol	26.92	18.86
PGSC0003DMT400067198	Potato	mitochondrion	25.21	18.85
PGSC0003DMT400010342	Potato	cytosol, plastid	28.63	18.61
PGSC0003DMT400067126	Potato	mitochondrion	28.21	18.49
PGSC0003DMT400044024	Potato	mitochondrion	23.5	18.27
PGSC0003DMT400044025	Potato	mitochondrion	23.08	17.94
PGSC0003DMT400052693	Potato	cytosol	25.21	17.88
PGSC0003DMT400052743	Potato	cytosol	25.21	17.88
PGSC0003DMT400090575	Potato	cytosol	24.79	17.74
PGSC0003DMT400010341	Potato	cytosol	26.92	17.7
PGSC0003DMT400090976	Potato	mitochondrion	25.21	17.51
PGSC0003DMT400038863	Potato	cytosol, mitochondrion, plastid	24.79	17.37
PGSC0003DMT400038864	Potato	extracellular	24.79	17.26
PGSC0003DMT400010340	Potato	nucleus	26.5	17.22
PGSC0003DMT400092021	Potato	cytosol	13.68	16.16
PGSC0003DMT400038861	Potato	plastid	26.07	16.09
PGSC0003DMT400064172	Potato	cytosol	23.93	15.77
PGSC0003DMT400073303	Potato	nucleus	27.35	14.81
PGSC0003DMT400036857	Potato	mitochondrion	25.21	14.57
PGSC0003DMT400090653	Potato	cytosol	17.09	14.23
PGSC0003DMT400067237	Potato	cytosol	17.52	14.09
PGSC0003DMT400057171	Potato	plastid	26.07	13.29
PGSC0003DMT400063858	Potato	cytosol	16.24	9.16
PGSC0003DMT400073788	Potato	nucleus	20.94	7.98
PGSC0003DMT400088687	Potato	cytosol	6.41	7.46
PGSC0003DMT400001980	Potato	nucleus, plastid	18.8	7.0
PGSC0003DMT400026093	Potato	nucleus, plastid	18.8	6.86
PGSC0003DMT400039936	Potato	plastid	19.66	6.73
PGSC0003DMT400023236	Potato	cytosol	19.23	6.54
PGSC0003DMT400020760	Potato	plastid	19.66	6.49
PGSC0003DMT400061014	Potato	mitochondrion	17.09	6.01
PGSC0003DMT400040869	Potato	cytosol	22.65	5.96
PGSC0003DMT400031805	Potato	cytosol	22.22	5.95
CDY23615	Canola	cytosol	0.85	1.52
PGSC0003DMT400019785	Potato	plastid	1.71	0.59

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102596277	EntrezGene:102605884	MapMan:16.4.1.2.4.5	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1CW52	PFAM:PF00069	PFAM:PF07189
EnsemblPlantsGene:PGSC0003DMG400029581	PGSC:PGSC0003DMG400029581	EnsemblPlants:PGSC0003DMT400076066	PFscan:PS50011	PANTHER:PTHR24361	PANTHER:PTHR24361:SF334
InterPro:Prot_kinase_dom	InterPro:SF3b5/RDS3-10	SMART:SM00220	SUPFAM:SSF56112	UniParc:UPI0002955CFE	:

Description

Splicing factor 3B subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400029581]

Coordinates

chr8:-:44842158..44848529

Molecular Weight (calculated)

26189.3 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.036

Length

234 amino acids

Sequence
(BLAST)

001: MMWKKLKVLG AGSYGTVSLA TPLPQYYSGI AIYGAVKSAE VAHSSSLRVE GKILDELKGS DYVVECIGED VSIENDKHTY NLMLEYAAGG TLHDLIHNPL
101: NLIMGESEAA YYSFQILTGI SHIHRNGYIH CDLKPASDRF NINSQLEHLQ AKYVGTGHAD LTRFEWAVNI QRDSYASYVG HYPMLAYFAI AENESIGRER
201: YNFMQELFSV FWLTCIMSEL SAISVLSCVP LPTR

Best Arabidopsis Sequence Match ( AT4G14342.2 )
(BLAST)

001: MQASDRFNIN SQLEHLQAKY VGTGHADLSR FEWAVNIQRD SYASYIGHYP MLSYFAIAEN ESIGRERYNF MQVCLLSCLL HITFSSDKST VQDLDYDSMF
101: I

Arabidopsis Description

Splicing factor 3B subunit 5/RDS3 complex subunit 10 [Source:TAIR;Acc:AT4G14342]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.