Factsheet for PGSC0003DMT400095474

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090449	Potato	cytosol	93.87	67.92
PGSC0003DMT400056161	Potato	cytosol	38.68	38.32
VIT_15s0046g01000.t01	Wine grape	cytosol, nucleus, peroxisome	51.89	38.06
PGSC0003DMT400023513	Potato	cytosol, mitochondrion, plastid	53.77	34.65
KRH06490	Soybean	cytosol	50.47	34.19
GSMUA_Achr6P14300_001	Banana	cytosol, nucleus, peroxisome	55.66	33.43
PGSC0003DMT400024511	Potato	peroxisome, plastid	52.83	30.68
PGSC0003DMT400053144	Potato	plastid	51.89	28.5
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	46.23	28.41
PGSC0003DMT400035990	Potato	peroxisome, plastid	50.0	27.6
PGSC0003DMT400012219	Potato	plastid	44.34	24.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400095474	EnsemblPlantsGene:PGSC0003DMG400045045	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023214	InterPro:Trehalose_PPase	PANTHER:PTHR43768	PANTHER:PTHR43768:SF4	PFAM:PF02358
PGSC:PGSC0003DMG400045045	SUPFAM:SSF56784	UniParc:UPI000294D22E	UniProt:M1DWD8	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400045045]

Coordinates

chr4:-:71718585..71720780

Molecular Weight (calculated)

23849.6 Da

IEP (calculated)

4.461

GRAVY (calculated)

-0.110

Length

212 amino acids

Sequence
(BLAST)

001: MGLAKLDGND FSIEYATWLV EHPCALEKFE EMMNIGKGKK IVILLDYDGT LSDIVPNPEE AFMTDKVQDF VKLKNVYYAG SHGLDIEVPL YSTNSNEKDF
101: GTVENIIYVV LKEHPNFRVS TGIKVFEIGP NIVWNKGHAL EYFLENLGFG NSDDVFPIYI GDDRTDEDAF KVLLKRGQGF PIVVTAAPKD TKALYSLREP
201: KEVMEFLLGL VA

Best Arabidopsis Sequence Match ( AT1G35910.1 )
(BLAST)

001: MTNHNALISD AKGSIGVAVR VPNQSLFSPG GGRYISIPRK KLVQKLEADP SQTRIHTWIE AMRASSPTRT RPGNISPLPE SDEEDEYSSW MAQHPSALTM
101: FEEIAEASKG KQIVMFLDYD GTLSPIVENP DRAYMSEEMR EAVKGVARYF PTAIVTGRCR DKVRRFVKLP GLYYAGSHGM DIKGPSKRNK HNKNNKGVLF
201: QAANEFLPMI DKVSKCLVEK MRDIEGANVE NNKFCVSVHY RCVDQKDWGL VAEHVTSILS EYPKLRLTQG RKVLEIRPTI KWDKGKALEF LLESLGFANS
301: NDVLPIYIGD DRTDEDAFKV LRNKGQGFGI LVSKIPKETS ATYSLQEPSE VGEFLQRLVE WKQMSLRGR

Arabidopsis Description

TPPDProbable trehalose-phosphate phosphatase D [Source:UniProtKB/Swiss-Prot;Acc:Q67XC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.