Factsheet for PGSC0003DMT400035990

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
peroxisome 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083960.2.1	Tomato	plastid	93.49	97.82
VIT_16s0022g00660.t01	Wine grape	plastid	79.69	79.48
KRH39976	Soybean	peroxisome	77.6	76.61
KRH23805	Soybean	cytosol	77.34	76.35
KRH62612	Soybean	cytosol	71.88	72.25
CDY66417	Canola	plastid	69.53	70.45
KRH56343	Soybean	cytosol	71.88	70.41
AT5G51460.3	Thale cress	nucleus, plastid	70.05	69.87
CDY56658	Canola	plastid	68.23	69.13
Bra022549.1-P	Field mustard	cytosol, plastid	67.71	68.6
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	60.94	67.83
HORVU4Hr1G036870.1	Barley	mitochondrion	37.5	67.61
PGSC0003DMT400012219	Potato	plastid	66.67	66.67
CDY00477	Canola	plastid	66.93	66.58
Bra028254.1-P	Field mustard	plastid	66.15	66.49
CDX99919	Canola	plastid	66.67	66.15
HORVU2Hr1G075440.2	Barley	cytosol	22.4	65.65
HORVU2Hr1G104360.2	Barley	cytosol, peroxisome, plastid	49.48	64.19
TraesCS1A01G210400.1	Wheat	plastid	63.28	63.78
EER91963	Sorghum	cytosol	63.28	63.61
PGSC0003DMT400056161	Potato	cytosol	35.42	63.55
TraesCS1D01G213700.1	Wheat	plastid	63.02	63.52
Zm00001d047110_P001	Maize	cytosol	62.5	62.99
Os10t0553300-01	Rice	cytosol, nucleus, peroxisome	62.5	62.83
HORVU1Hr1G053770.2	Barley	plastid	61.72	60.46
PGSC0003DMT400024511	Potato	peroxisome, plastid	53.65	56.44
TraesCS1B01G224300.2	Wheat	golgi, vacuole	62.76	55.02
PGSC0003DMT400053144	Potato	plastid	54.69	54.4
PGSC0003DMT400023513	Potato	cytosol, mitochondrion, plastid	43.49	50.76
PGSC0003DMT400090449	Potato	cytosol	38.28	50.17
PGSC0003DMT400095474	Potato	cytosol	27.6	50.0
GSMUA_Achr2P18630_001	Banana	cytosol, peroxisome, plastid	23.96	41.07

Protein Annotations

EntrezGene:102602255	MapMan:3.3.2	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805
GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
UniProt:M1B338	PFAM:PF02358	EnsemblPlantsGene:PGSC0003DMG400013857	PGSC:PGSC0003DMG400013857	EnsemblPlants:PGSC0003DMT400035990	PANTHER:PTHR43768
PANTHER:PTHR43768:SF6	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0002959832
RefSeq:XP_006366166.1	RefSeq:XP_006366167.1	RefSeq:XP_006366169.1	RefSeq:XP_006366170.1	RefSeq:XP_015160249.1	RefSeq:XP_015160250.1

Description

Trehalose 6-phosphate phosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400013857]

Coordinates

chr3:+:39220565..39223929

Molecular Weight (calculated)

42990.3 Da

IEP (calculated)

7.878

GRAVY (calculated)

-0.345

Length

384 amino acids

Sequence
(BLAST)

001: MDLKSNTSPV VTDPAPLTPS RLGIHSALMP YPPAGPTFSP TLFLTIPRKK PGILDDVRSN TWLVDAMKSS SPTHRKKSKD STAELASNEN DLAYRIWMLK
101: YPSALSSFEQ ITNYAKGKRI ALFLDYDGTL SPIVDDPDRA FMSSAMRAAV RNVAKYFPTA IISGRSRDKV YDFVGLSELY YAGSHGMDIM SPVRAISNDY
201: SCIRSTDKQG KEVNLFQPAS EFLPMIEEVL RSLVELTKDI SGAKVENNKF CVSVHYRNVD EKSWSTIGES VDELLKHYPR LRLTHGRKVL EVRPVLNWDK
301: GKAVEFLLES LGLNNCDDVL PIYIGDDRTD EDAFKVLREG NKGYGILVSS APKESNAFYS LRDPSEVMEF LKCLVSWKKS SCSN

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.