Factsheet for PGSC0003DMT400024511

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 6
peroxisome 2
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072920.2.1	Tomato	extracellular	97.53	97.53
PGSC0003DMT400056161	Potato	cytosol	42.19	71.96
VIT_18s0001g05300.t01	Wine grape	plastid	69.04	67.2
CDY26849	Canola	mitochondrion	42.19	66.09
AT1G35910.1	Thale cress	plastid	63.84	63.14
KRH30218	Soybean	plastid	36.71	62.62
Zm00001d052227_P001	Maize	cytosol	60.0	61.52
PGSC0003DMT400053144	Potato	plastid	64.93	61.4
Bra015631.1-P	Field mustard	plastid	63.29	61.11
KRH49582	Soybean	mitochondrion	47.67	61.05
KRH62370	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	61.92	60.92
CDX87477	Canola	plastid	63.01	60.85
KRH18894	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	61.92	60.75
Os02t0753000-01	Rice	cytosol	60.82	60.49
GSMUA_Achr10P...	Banana	cytosol, plastid	56.16	60.29
GSMUA_Achr2P22170_001	Banana	cytoskeleton, cytosol, peroxisome	54.79	60.24
KXG30780	Sorghum	cytosol	61.37	60.22
CDY14635	Canola	plastid	62.19	60.21
KRH53087	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	62.47	60.0
CDX88416	Canola	plastid	61.92	59.79
Bra008344.1-P	Field mustard	plastid	61.37	59.42
Zm00001d032298_P002	Maize	plastid	60.27	59.14
CDY26848	Canola	plastid	61.37	59.1
TraesCS6D01G281100.1	Wheat	plastid	59.73	59.08
KRH16701	Soybean	cytosol, mitochondrion, peroxisome, plastid	60.82	58.58
HORVU6Hr1G074960.2	Barley	cytosol	60.0	58.4
Os03t0386500-01	Rice	cytosol, extracellular, peroxisome	49.59	58.39
Os08t0409100-01	Rice	peroxisome	59.18	58.38
Zm00001d006913_P002	Maize	plastid	52.6	58.36
EES13815	Sorghum	peroxisome	59.73	57.98
GSMUA_Achr2P14790_001	Banana	cytosol	58.9	57.8
TraesCS5A01G190000.1	Wheat	plastid	58.63	57.37
TraesCS5D01G200800.1	Wheat	plastid	58.63	57.37
GSMUA_Achr4P24170_001	Banana	cytosol	60.0	57.03
TraesCS2B01G187100.1	Wheat	cytosol, plastid	55.62	56.7
TraesCS2A01G161000.1	Wheat	plastid	55.34	56.58
TraesCS2A01G161100.1	Wheat	cytosol, plastid	55.34	56.42
TraesCS2B01G187200.1	Wheat	cytosol, plastid	55.34	56.42
TraesCS2A01G161200.1	Wheat	cytosol, plastid	55.07	56.15
EER97568	Sorghum	cytosol, plastid	54.52	56.06
GSMUA_Achr7P11700_001	Banana	plastid	58.9	55.99
TraesCS7D01G182600.1	Wheat	peroxisome, plastid	55.62	55.92
EER97569	Sorghum	cytosol, plastid	53.97	55.65
EER96661	Sorghum	plastid	58.08	55.64
Zm00001d018082_P001	Maize	cytosol	60.55	55.53
HORVU7Hr1G037140.1	Barley	plastid	55.07	55.52
TraesCS2D01G168100.1	Wheat	cytosol, plastid	54.25	55.31
Os09t0369400-01	Rice	plastid	56.71	55.2
TraesCS2D01G168200.1	Wheat	cytosol, plastid	53.97	55.03
Zm00001d005658_P001	Maize	plastid	57.81	54.95
TraesCS7B01G085800.1	Wheat	peroxisome, plastid	54.79	54.95
TraesCS7A01G180800.1	Wheat	peroxisome, plastid	53.97	54.57
TraesCS2B01G187000.1	Wheat	peroxisome, plastid	53.15	54.19
GSMUA_Achr3P01660_001	Banana	cytosol, mitochondrion, plastid	57.26	53.73
PGSC0003DMT400035990	Potato	peroxisome, plastid	56.44	53.65
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	50.68	53.62
TraesCS6B01G330900.1	Wheat	cytosol	59.73	53.56
Zm00001d022192_P002	Maize	plastid	54.25	53.51
KXG36741	Sorghum	cytosol	53.15	53.3
EER94771	Sorghum	cytosol, peroxisome, plastid	53.42	53.13
PGSC0003DMT400095474	Potato	cytosol	30.68	52.83
Zm00001d029371_P001	Maize	cytosol	52.6	52.75
TraesCS6A01G301800.1	Wheat	cytosol, nucleus, peroxisome, plastid	59.73	52.4
Zm00001d020272_P001	Maize	peroxisome, plastid	57.26	52.38
TraesCS2D01G168300.1	Wheat	peroxisome, plastid	55.34	51.53
TraesCS5B01G193100.2	Wheat	plastid	58.36	51.33
PGSC0003DMT400090449	Potato	cytosol	41.1	51.19
KXG19623	Sorghum	cytosol	53.7	50.65
Os07t0624600-01	Rice	cytosol	50.68	50.55
Zm00001d022193_P001	Maize	cytosol	52.33	50.26
HORVU2Hr1G029290.1	Barley	golgi, mitochondrion, peroxisome, plastid	55.62	50.12
HORVU5Hr1G058300.1	Barley	plastid	58.63	50.12
PGSC0003DMT400012219	Potato	plastid	51.51	48.96
PGSC0003DMT400023513	Potato	cytosol, mitochondrion, plastid	42.47	47.11
HORVU1Hr1G061580.4	Barley	plastid	26.03	46.8
Zm00001d044854_P001	Maize	cytosol	48.77	41.49
CDY37091	Canola	plastid	27.12	38.08
Bra034400.1-P	Field mustard	plastid	27.12	38.08
HORVU6Hr1G066240.1	Barley	plastid	15.07	37.93

Protein Annotations

EntrezGene:102602183	MapMan:3.3.2	Gene3D:3.30.70.1020	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004805	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0005992	GO:GO:0006950	GO:GO:0006970	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987
GO:GO:0015927	GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023214	UniProt:M1AK94	PFAM:PF02358	EnsemblPlantsGene:PGSC0003DMG400009477	PGSC:PGSC0003DMG400009477	EnsemblPlants:PGSC0003DMT400024511
PANTHER:PTHR43768	PANTHER:PTHR43768:SF2	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase
UniParc:UPI000296B3A9	RefSeq:XP_006353999.1	SEG:seg	:	:	:

Description

Trehalose-6-phosphate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400009477]

Coordinates

chr4:+:62838516..62840884

Molecular Weight (calculated)

41395.6 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.512

Length

365 amino acids

Sequence
(BLAST)

001: MTNQNVIISD PRSGFDSSLL SFSPAVPGPL PQPGRFIAVP AKKSFKNIDS TDATRITALL DSMRASSPTR RSSETENLKS WIDHHPSALN MFDEIINSSK
101: GKQIVVFLDY DGTLSPIVDD PDKAFMTSEM REAVKNTSKY FPTAIVSGRC RAKVFNFVKL SQLYYAGSHG MDIKAPVKGR NYRKGNNQTV LCQPAREFLP
201: MISEVYKSLV EKTKSIPGAK VENNKFCLSV HFRRVEEKRW TELAEQVKSV TKEYPRLRLT QGRKVLEIRP SIKWDKGNAL EFLLESLGYA NSNDVLPIYI
301: GDDRTDEDAF KVLRDRGQGF GILVSKSPKE TNATYSLQEP LEVMYFLNRL VEWKQSSLQQ KYQKK

Best Arabidopsis Sequence Match ( AT5G65140.1 )
(BLAST)

001: MVSQNVVVSD AKTGIITVST VSNSSVFTPT AQKPPTAPGY ISVSKKKLLK NLEINGADQS QRLNSWVDSM RASSPTHLKS LSSFSSEEEH NSWIKRHPSA
101: LNMFERIIEE ARGKQIVMFL DYDGTLSPIV DDPDRAFMTS KMRRTVKKMA KCFPTSIVTG RCIDKVYSFV KLAELYYAGS HGMDIKGPTK GFSRYNKDKP
201: SVLYQPAGDF LPMIDEVYKQ LVEKTKSTPG AKVENNKFCL SVHFRCVDEK KWSELASKVR SVVKNYPTLK LSQGRKVFEI RPIIKWNKGK ALEFLLESLG
301: FENCNDVFPI YIGDDKTDED AFKLLRGRGQ GFGILVSKFP KDTSASYSLQ DPPEVMNFLG RLVEWKQMQQ

Arabidopsis Description

TPPJProbable trehalose-phosphate phosphatase J [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ05]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.