Factsheet for PGSC0003DMT400023513

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
peroxisome 1
vacuole 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007290.2.1	Tomato	cytosol, mitochondrion, nucleus	97.26	95.24
VIT_16s0050g02600.t01	Wine grape	mitochondrion	60.49	58.36
PGSC0003DMT400090449	Potato	cytosol	48.63	54.61
GSMUA_Achr6P14300_001	Banana	cytosol, nucleus, peroxisome	57.75	53.82
PGSC0003DMT400095474	Potato	cytosol	34.65	53.77
PGSC0003DMT400056161	Potato	cytosol	34.95	53.74
KRH64499	Soybean	golgi, mitochondrion	56.53	50.68
KRH53451	Soybean	golgi, vacuole	55.62	49.86
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	47.42	45.22
PGSC0003DMT400035990	Potato	peroxisome, plastid	50.76	43.49
PGSC0003DMT400024511	Potato	peroxisome, plastid	47.11	42.47
PGSC0003DMT400012219	Potato	plastid	47.11	40.36
PGSC0003DMT400053144	Potato	plastid	47.11	40.16

Protein Annotations

MapMan:3.3.2	Gene3D:3.40.50.1000	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805
GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
UniProt:M1AII2	PFAM:PF02358	EnsemblPlantsGene:PGSC0003DMG400009109	PGSC:PGSC0003DMG400009109	EnsemblPlants:PGSC0003DMT400023513	PANTHER:PTHR43768
PANTHER:PTHR43768:SF4	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0002959440

Description

Trehalose-6-phosphate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400009109]

Coordinates

chr3:+:48790248..48792267

Molecular Weight (calculated)

36810.0 Da

IEP (calculated)

5.146

GRAVY (calculated)

-0.298

Length

329 amino acids

Sequence
(BLAST)

001: MGFQNGLART QRIESISKAT KLNKTEPKEE SKPADQMDIS WLEEHPSALS SFEEMMDAAK GKWVVVFLDY DGTLSPIVND PERAFMSDMM RSAVGDVAKL
101: YPTAIISGRS RQKVYGFVKL DDVFYAGSHG MDIMGPAIQA SCYDGKYQSK ALDQKGNELT VFQPAQDFLP SIEKMLNELE ETTSEINGAL VEDNRFCISV
201: HYRHVLQEDL GLLEKKVQAL VAKYPGFHLT RGKKVIEIRP SIKWNKGDAL VYLLETLGFT NSSDVLPIYI GDDKTDEDAF KVLKCRGQGY PIIVSSNPRD
301: TLASYSLRDP SEVLSFLIRL ARWGEVSAV

Best Arabidopsis Sequence Match ( AT1G35910.1 )
(BLAST)

001: MTNHNALISD AKGSIGVAVR VPNQSLFSPG GGRYISIPRK KLVQKLEADP SQTRIHTWIE AMRASSPTRT RPGNISPLPE SDEEDEYSSW MAQHPSALTM
101: FEEIAEASKG KQIVMFLDYD GTLSPIVENP DRAYMSEEMR EAVKGVARYF PTAIVTGRCR DKVRRFVKLP GLYYAGSHGM DIKGPSKRNK HNKNNKGVLF
201: QAANEFLPMI DKVSKCLVEK MRDIEGANVE NNKFCVSVHY RCVDQKDWGL VAEHVTSILS EYPKLRLTQG RKVLEIRPTI KWDKGKALEF LLESLGFANS
301: NDVLPIYIGD DRTDEDAFKV LRNKGQGFGI LVSKIPKETS ATYSLQEPSE VGEFLQRLVE WKQMSLRGR

Arabidopsis Description

TPPDProbable trehalose-phosphate phosphatase D [Source:UniProtKB/Swiss-Prot;Acc:Q67XC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.