Factsheet for VIT_16s0050g02600.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
peroxisome 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0046g01000.t01	Wine grape	cytosol, nucleus, peroxisome	51.91	61.25
PGSC0003DMT400023513	Potato	cytosol, mitochondrion, plastid	58.36	60.49
Solyc03g007290.2.1	Tomato	cytosol, mitochondrion, nucleus	58.65	59.52
KRH53451	Soybean	golgi, vacuole	60.7	56.4
KRH64499	Soybean	golgi, mitochondrion	60.12	55.86
GSMUA_Achr6P14300_001	Banana	cytosol, nucleus, peroxisome	55.72	53.82
VIT_16s0022g00660.t01	Wine grape	plastid	51.91	45.97
VIT_00s0304g00080.t01	Wine grape	cytosol, peroxisome	49.56	45.31
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	51.32	44.53
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	51.03	44.27
VIT_18s0001g05300.t01	Wine grape	plastid	48.68	44.27
VIT_11s0037g00720.t01	Wine grape	nucleus	12.61	38.74

Protein Annotations

EntrezGene:100258645	wikigene:100258645	MapMan:3.3.2	Gene3D:3.40.50.1000	EMBL:AM423774	ProteinID:CAN79955
ProteinID:CAN79955.1	ProteinID:CCB47760	ProteinID:CCB47760.1	ncoils:Coil	UniProt:F6H6F8	EMBL:FN595243
GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975	GO:GO:0005992	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	EntrezGene:LOC100258645	wikigene:LOC100258645	PFAM:PF02358
PANTHER:PTHR43768	PANTHER:PTHR43768:SF4	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase
UniParc:UPI0002109D99	ArrayExpress:VIT_16s0050g02600	EnsemblPlantsGene:VIT_16s0050g02600	EnsemblPlants:VIT_16s0050g02600.t01	RefSeq:XP_002268007	RefSeq:XP_002268007.1
RefSeq:XP_010662574.1	:	:	:	:	:

Description

Trehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:F6H6F8]

Coordinates

chr16:+:19585122..19587018

Molecular Weight (calculated)

38783.2 Da

IEP (calculated)

6.721

GRAVY (calculated)

-0.463

Length

341 amino acids

Sequence
(BLAST)

001: MRRNLLKVWK AFGFLKAGNS QNKETMTRVK NDDCDATTNG LSDECYKSWM MEHPSAITSF DQMVSKAKGK SIVVFLDYDG TLSPIVDDPD LAFMSDEMRS
101: AVREIAKNFP TAIISGRSRE KVYEFVQLTE VYYAGSHGMD IMGPPHQVKS CDAQYQIKAL DKQGHEVILF QPAKDFLPAI QKISNVLEEK TQKIEGALIE
201: DNRFCISVHF RRVHEKDYDT LEEKVKSVVK NYPEFRLTSG KKVMEIRPSI KWDKGCALEY LLDTLGFSDS SDVLPLYIGD DRTDEDAFKV IRRRGEGYPI
301: IVSSTPKETK AAYSLRDPSE VLSFLTHLAK WRNSFSGHSV D

Best Arabidopsis Sequence Match ( AT1G78090.1 )
(BLAST)

001: MTNQNVIVSD RKPILGLKTI TVSVSNSPLF SNSFPTYFNF PRRKLLKLLE AADKNNLVVA PKITSMIDSM RDSSPTRLRS SSYDSVSDND DKTSWIVRFP
101: SALNMFDEIV NAAKGKQIVM FLDYDGTLSP IVEDPDKAFI THEMREVVKD VASNFPTAIV TGRSIEKVRS FVQVNEIYYA GSHGMDIEGP TNENSNGQSN
201: ERVLFQPARE FLPMIEKVVN ILEEKTKWIP GAMVENNKFC LSVHFRRVDE KRWPALAEVV KSVLIDYPKL KLTQGRKVLE IRPTIKWDKG QALNFLLKSL
301: GYENSDDVVP VYIGDDRTDE DAFKVLRERG QGFGILVSKV PKDTNASYSL QDPSQVNKFL ERLVEWKRKT VGEE

Arabidopsis Description

TPPBTrehalose-phosphate phosphatase B [Source:UniProtKB/Swiss-Prot;Acc:Q9C9S4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.