Factsheet for VIT_16s0022g00660.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
mitochondrion 1
peroxisome 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035990	Potato	peroxisome, plastid	79.48	79.69
Solyc03g083960.2.1	Tomato	plastid	75.84	79.56
KRH39976	Soybean	peroxisome	76.88	76.09
KRH23805	Soybean	cytosol	76.62	75.84
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	75.32	73.79
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	75.06	73.54
KRH62612	Soybean	cytosol	70.91	71.47
KRH56343	Soybean	cytosol	71.43	70.15
HORVU4Hr1G036870.1	Barley	mitochondrion	38.7	69.95
CDY66417	Canola	plastid	68.83	69.92
AT5G51460.3	Thale cress	nucleus, plastid	69.35	69.35
HORVU2Hr1G075440.2	Barley	cytosol	23.38	68.7
CDY56658	Canola	plastid	67.53	68.6
Bra022549.1-P	Field mustard	cytosol, plastid	67.01	68.07
CDY00477	Canola	plastid	66.75	66.58
Bra028254.1-P	Field mustard	plastid	65.97	66.49
CDX99919	Canola	plastid	66.49	66.15
HORVU2Hr1G104360.2	Barley	cytosol, peroxisome, plastid	50.39	65.54
TraesCS1A01G210400.1	Wheat	plastid	64.68	65.35
TraesCS1D01G213700.1	Wheat	plastid	64.42	65.09
EER91963	Sorghum	cytosol	63.38	63.87
Os10t0553300-01	Rice	cytosol, nucleus, peroxisome	62.86	63.35
Zm00001d047110_P001	Maize	cytosol	62.08	62.73
HORVU1Hr1G053770.2	Barley	plastid	63.12	61.99
TraesCS1B01G224300.2	Wheat	golgi, vacuole	64.16	56.39
VIT_00s0304g00080.t01	Wine grape	cytosol, peroxisome	54.03	55.76
VIT_15s0046g01000.t01	Wine grape	cytosol, nucleus, peroxisome	41.82	55.71
VIT_18s0001g05300.t01	Wine grape	plastid	51.95	53.33
VIT_11s0037g00720.t01	Wine grape	nucleus	15.32	53.15
VIT_16s0050g02600.t01	Wine grape	mitochondrion	45.97	51.91
GSMUA_Achr2P18630_001	Banana	cytosol, peroxisome, plastid	25.19	43.3

Protein Annotations

EntrezGene:100251837	wikigene:100251837	MapMan:3.3.2	Gene3D:3.40.50.1000	UniProt:A5AQ08	EMBL:AM431885
ProteinID:CAN71555	ProteinID:CAN71555.1	ProteinID:CBI24586	ProteinID:CBI24586.3	EMBL:FN595506	GO:GO:0003674
GO:GO:0003824	GO:GO:0004805	GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023214	EntrezGene:LOC100251837	wikigene:LOC100251837	PFAM:PF02358	PANTHER:PTHR43768
PANTHER:PTHR43768:SF6	SUPFAM:SSF56784	TIGR:TC67690	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase
UniParc:UPI000151F377	ArrayExpress:VIT_16s0022g00660	EnsemblPlantsGene:VIT_16s0022g00660	EnsemblPlants:VIT_16s0022g00660.t01	unigene:Vvi.7786	RefSeq:XP_002265679
RefSeq:XP_002265679.2	RefSeq:XP_010662410.1	RefSeq:XP_010662412.1	RefSeq:XP_010662413.1	RefSeq:XP_010662414.1	:

Description

Trehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A5AQ08]

Coordinates

chr16:+:12003194..12006082

Molecular Weight (calculated)

43677.4 Da

IEP (calculated)

9.157

GRAVY (calculated)

-0.352

Length

385 amino acids

Sequence
(BLAST)

001: MDLKSNHSSP VLTDPPPVNK SRFGIRSNLL PYSPPGAAFS STLFLTIPRK KNGVLDDVRS SSWLDAMKSS SPTHKKITKD FNTVLASTDT DVTYRTWLLK
101: YPSALKSFEQ ITNYAKGKRI ALFLDYDGTL SPIVDNPDRA FMSDCMRATV RNVAKFFPTA IISGRSRDKV YNFVGLTELY YAGSHGMDIM GPVRHSISND
201: HPNCIRLTDK QGKEVNLFQP ASEFLPMIDE VFRSLVRCTK EIKGAEVENN KFCVSVHYRN VDEKYWKTIA QCVDDILKDY PRLRLTHGRK VLEVRPVIDW
301: DKGKAVEFLL ESLGLNNSDD VLPIYVGDDR TDEDAFKFLR DGKRGYGILV SSVPKESNAF YSLRDPLEVM EFLKLLVMWK KSSAL

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.