CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00477	Canola	plastid	98.97	99.22
Bra028254.1-P	Field mustard	plastid	97.93	99.21
AT5G51460.3	Thale cress	nucleus, plastid	89.41	89.87
CDY66417	Canola	plastid	87.6	89.45
CDY56658	Canola	plastid	87.6	89.45
Solyc03g083960.2.1	Tomato	plastid	63.82	67.3
PGSC0003DMT400035990	Potato	peroxisome, plastid	66.15	66.67
VIT_16s0022g00660.t01	Wine grape	plastid	66.15	66.49
KRH23805	Soybean	cytosol	65.89	65.55
KRH39976	Soybean	peroxisome	65.89	65.55
HORVU2Hr1G075440.2	Barley	cytosol	21.19	62.6
CDX94101	Canola	cytosol	16.28	62.38
KRH62612	Soybean	cytosol	61.24	62.04
HORVU4Hr1G036870.1	Barley	mitochondrion	33.85	61.5
KRH56343	Soybean	cytosol	61.5	60.71
CDX98760	Canola	nucleus	55.3	59.12
CDX94103	Canola	nucleus	55.04	58.84
CDY70318	Canola	mitochondrion	35.4	58.8
HORVU2Hr1G104360.2	Barley	cytosol, peroxisome, plastid	44.44	58.11
CDX82953	Canola	plastid	56.07	57.87
TraesCS1A01G210400.1	Wheat	plastid	56.85	57.74
CDX79165	Canola	plastid	55.81	57.6
EER91963	Sorghum	cytosol	56.85	57.59
TraesCS1D01G213700.1	Wheat	plastid	56.59	57.48
Os10t0553300-01	Rice	cytosol, nucleus, peroxisome	56.33	57.07
Zm00001d047110_P001	Maize	cytosol	55.81	56.69
CDY26849	Canola	mitochondrion	33.59	55.79
HORVU1Hr1G053770.2	Barley	plastid	55.56	54.85
CDX90361	Canola	cytosol, peroxisome, plastid	47.03	51.41
TraesCS1B01G224300.2	Wheat	golgi, vacuole	56.59	50.0
CDY26848	Canola	plastid	48.32	49.34
CDY14635	Canola	plastid	48.06	49.34
CDY15842	Canola	cytosol	42.89	49.11
CDY39454	Canola	cytosol	30.49	48.96
CDX87477	Canola	plastid	47.55	48.68
CDY63411	Canola	cytosol	42.38	48.38
CDX88416	Canola	plastid	47.03	48.15
CDX90831	Canola	mitochondrion	8.79	47.22
CDY22393	Canola	cytosol	45.22	47.17
CDY08815	Canola	plastid	43.67	46.56
CDX72676	Canola	mitochondrion	45.22	45.93
CDY31283	Canola	plastid	43.93	45.33
CDX98758	Canola	cytosol, nucleus, peroxisome	16.8	43.33
GSMUA_Achr2P18630_001	Banana	cytosol, peroxisome, plastid	22.74	39.29
CDY14544	Canola	endoplasmic reticulum, plasma membrane	43.93	37.44
CDY37091	Canola	plastid	23.77	35.38

Protein Annotations

MapMan:3.3.2	Gene3D:3.40.50.1000	GO:A0A078EGK8	EnsemblPlants:CDX99919	ProteinID:CDX99919	ProteinID:CDX99919.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975	GO:GO:0005992	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00108748001	InterPro:HAD-SF_hydro_IIB
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF6
SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0004EBA690	:

Description

BnaC09g27860D

Coordinates

chrLK031915:-:688496..692059

Molecular Weight (calculated)

43134.5 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.267

Length

387 amino acids

Sequence
(BLAST)

001: MDIKSGHSSP VMTDSPQISN SRLTARQSRL PPYSSATAVS QNNNLLLTVP RKKTGIIDDV KANAWLDAMI ASSPTPAIVN KDNISSSDAT TTDMTYREWT
101: VKYPSALTTF EKIMSVAKGK RIALFLDYDG TLSPIVEEPD AAYMSSDMRT AVQNVAKYFP TAIISGRSRD KVYEFVGLSE LYYAGSHGMD IMSPAGESLN
201: HKHLSRTVSI NEQGKDVNLF QTASEFLPMI DKLLCSLVES TKDIKGVKVE DNRFCISVHY RNVEEKNWTL VAQCVDDVIR TYPKLRLTYG RKVLEIRPVI
301: DWDKGKAVTF LLESLGLNNC EDVLPIYVGD DRTDEDAFKV LRDGPNHGYG VLVSAMPKVS NAFYSLRDPS EVMEFLKALV TWKRSLG

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.