CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22393	Canola	cytosol	93.96	96.5
CDY70318	Canola	mitochondrion	58.27	95.28
AT4G39770.1	Thale cress	cytosol	79.53	86.82
CDX90361	Canola	cytosol, peroxisome, plastid	80.05	86.16
CDY39454	Canola	cytosol	53.81	85.06
PGSC0003DMT400056161	Potato	cytosol	41.47	73.83
CDY15842	Canola	cytosol	65.09	73.37
CDY63411	Canola	cytosol	65.09	73.16
Solyc04g054930.2.1	Tomato	cytosol, peroxisome, plastid	58.01	69.72
GSMUA_Achr9P12940_001	Banana	cytosol, peroxisome, plastid	48.56	66.55
Solyc05g051880.2.1	Tomato	plastid	47.24	64.29
VIT_00s0304g00080.t01	Wine grape	cytosol, peroxisome	61.15	62.47
PGSC0003DMT400053144	Potato	plastid	60.89	60.1
CDY26849	Canola	mitochondrion	36.48	59.66
CDX94101	Canola	cytosol	15.49	58.42
CDY08815	Canola	plastid	55.64	58.4
CDY31283	Canola	plastid	55.91	56.8
GSMUA_AchrUn_...	Banana	peroxisome	54.07	55.23
GSMUA_Achr6P30350_001	Banana	plastid	51.44	54.75
GSMUA_Achr10P...	Banana	plastid	52.49	54.05
CDX87477	Canola	plastid	53.28	53.7
CDY14635	Canola	plastid	52.76	53.32
GSMUA_Achr10P...	Banana	plastid	56.43	53.22
CDX88416	Canola	plastid	52.49	52.91
CDY26848	Canola	plastid	52.23	52.51
GSMUA_Achr4P01810_001	Banana	cytosol, peroxisome, plastid	51.44	52.27
CDY14544	Canola	endoplasmic reticulum, plasma membrane	58.53	49.12
CDX90831	Canola	mitochondrion	9.19	48.61
CDX98760	Canola	nucleus	45.41	47.79
CDX94103	Canola	nucleus	44.88	47.24
CDX82953	Canola	plastid	45.41	46.13
CDX79165	Canola	plastid	45.41	46.13
CDY66417	Canola	plastid	45.67	45.91
CDY56658	Canola	plastid	45.67	45.91
CDY00477	Canola	plastid	46.19	45.6
CDX99919	Canola	plastid	45.93	45.22
CDX98758	Canola	cytosol, nucleus, peroxisome	15.75	40.0
OQU89414	Sorghum	cytosol	17.06	38.46
CDY37091	Canola	plastid	22.57	33.08

Protein Annotations

MapMan:3.3.2	Gene3D:3.30.70.1020	Gene3D:3.40.50.1000	GO:A0A078C6I1	EnsemblPlants:CDX72676	ProteinID:CDX72676
ProteinID:CDX72676.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975	GO:GO:0005992
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00100254001
InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	PFAM:PF02358	PANTHER:PTHR43768
PANTHER:PTHR43768:SF1	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0004EEBA9B

Description

BnaC07g46980D

Coordinates

chrLK031796:+:2638791..2642438

Molecular Weight (calculated)

43634.6 Da

IEP (calculated)

8.680

GRAVY (calculated)

-0.462

Length

381 amino acids

Sequence
(BLAST)

001: MGGVLVNARG PRGGCWERFF LRGCWERYNA KINLKIVRFI EENTKPEKIE TGDKSKTDAT LTVKTKVLQD LIINNGGGLI NSWVDSMRAC SPTHLKSSMK
101: QSSWLTEHPS ALDMFDEILN VSEGKKIVMF LDYDGTLSPI VDDPDRAFMS KEMRRTVRKL AKCFPTAIVS GRCREKVYNF VKLTELYYAG SHGMDIKGPE
201: QGSKYKDDKS LLCQPATEFL PMIDEVYQKL VDKTNFTPGA NIENNKFCVS VHFRRVDEKN WSDLANQVRS VMKDYPELRL TQGRKVLEIR PIIKWDKGKA
301: VEFLLESLGY ANCTDVFPLY IGDDRTDEDA FKILRERRQG LGILVSKIPK ETNALYSLQE PDEVMNFLQR LVEWKQLRSG A

Best Arabidopsis Sequence Match ( AT4G39770.1 )
(BLAST)

001: MVRFIEENTK LVEKETGNKS NNDVTTTKKK ALQDIIINNG VGLINSWVDS MRACSPTHLK SLLKQSSWLT EHPSALDMFE EILHLSEGKQ IVMFLDYDGT
101: LSPIVDDPDR AFMSRKMRRT VRKLANCFPT AIVSGRCIEK VYNFVKLTEL YYAGSHGMDI KGPEQGSKYE QILQDSKSLL CQPATEFLPM IDEVYHKLVE
201: KTKSTPGAQV ENNKFCVSVH FRRVDENNWS DLANQVRSVM KDYPKLRLTQ GRKVLEVRPI IKWDKGKALE FLLESLGYAN CTDVFPLYIG DDRTDEDAFK
301: VLRERRQGLG ILVSKFPKET SASYSLQEPD EVMEFLQRLV EWKQLRSGA

Arabidopsis Description

TPPHProbable trehalose-phosphate phosphatase H [Source:UniProtKB/Swiss-Prot;Acc:Q8GWG2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.