Factsheet for PGSC0003DMT400053144

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
peroxisome 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054930.2.1	Tomato	cytosol, peroxisome, plastid	81.09	98.74
PGSC0003DMT400056161	Potato	cytosol	47.41	85.51
KRH26019	Soybean	cytosol	19.43	78.95
VIT_00s0304g00080.t01	Wine grape	cytosol, peroxisome	74.61	77.21
KRH31279	Soybean	plastid	72.28	76.86
KRG97593	Soybean	plastid	72.28	76.44
CDY70318	Canola	mitochondrion	45.6	75.54
KRH75558	Soybean	cytosol, extracellular, peroxisome	12.69	74.24
KRH43210	Soybean	cytosol, nucleus, peroxisome	69.43	73.22
KRH59366	Soybean	plastid	68.39	72.93
GSMUA_Achr9P12940_001	Banana	cytosol, peroxisome, plastid	51.55	71.58
AT5G65140.1	Thale cress	plastid	66.58	69.46
Bra006047.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	50.26	69.29
Bra024359.1-P	Field mustard	plastid	59.84	68.75
AT4G39770.1	Thale cress	cytosol	61.66	68.19
Bra010658.1-P	Field mustard	cytosol	60.88	68.12
Bra011835.1-P	Field mustard	cytosol	60.62	67.83
CDY08815	Canola	plastid	63.73	67.77
CDY31283	Canola	plastid	64.77	66.67
CDX90361	Canola	cytosol, peroxisome, plastid	61.14	66.67
Bra031879.1-P	Field mustard	plastid	65.03	66.23
AT2G22190.1	Thale cress	cytosol, nucleus, peroxisome	60.62	66.1
Bra030256.1-P	Field mustard	cytosol	57.77	65.98
CDY15842	Canola	cytosol	57.77	65.98
AT5G10100.1	Thale cress	plastid	64.51	65.53
CDY63411	Canola	cytosol	57.51	65.49
PGSC0003DMT400024511	Potato	peroxisome, plastid	61.4	64.93
CDY39454	Canola	cytosol	40.41	64.73
GSMUA_AchrUn_...	Banana	peroxisome	62.18	64.34
GSMUA_Achr6P30350_001	Banana	plastid	59.59	64.25
CDY22393	Canola	cytosol	61.14	63.61
Bra009057.1-P	Field mustard	plastid	61.14	63.44
Bra033634.1-P	Field mustard	cytosol	60.62	63.07
GSMUA_Achr10P...	Banana	plastid	59.84	62.43
CDX72676	Canola	mitochondrion	60.1	60.89
GSMUA_Achr10P...	Banana	plastid	63.47	60.64
GSMUA_Achr4P01810_001	Banana	cytosol, peroxisome, plastid	57.51	59.2
PGSC0003DMT400035990	Potato	peroxisome, plastid	54.4	54.69
CDY14544	Canola	endoplasmic reticulum, plasma membrane	64.25	54.63
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	48.7	54.49
PGSC0003DMT400095474	Potato	cytosol	28.5	51.89
PGSC0003DMT400090449	Potato	cytosol	38.34	50.51
PGSC0003DMT400012219	Potato	plastid	49.48	49.74
PGSC0003DMT400023513	Potato	cytosol, mitochondrion, plastid	40.16	47.11
OQU89414	Sorghum	cytosol	17.62	40.24
KRH38605	Soybean	cytosol	41.97	31.33

Protein Annotations

EntrezGene:102591031	MapMan:3.3.2	Gene3D:3.30.70.1020	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004805	GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023214	UniProt:M1BUG9	PFAM:PF02358	EnsemblPlantsGene:PGSC0003DMG400020619	PGSC:PGSC0003DMG400020619	EnsemblPlants:PGSC0003DMT400053144
PANTHER:PTHR43768	PANTHER:PTHR43768:SF1	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase
UniParc:UPI0002967FD6	RefSeq:XP_006355362.1	SEG:seg	:	:	:

Description

Trehalose-6-phosphate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400020619]

Coordinates

chr4:+:51533770..51536649

Molecular Weight (calculated)

43481.4 Da

IEP (calculated)

9.860

GRAVY (calculated)

-0.382

Length

386 amino acids

Sequence
(BLAST)

001: MTQQNVVVSD PKSGINLTIP VSNSSALFTT AAQKPPPGPG PGSCITISRK TLVEINGNNS ARINSWVESM RASSPTHHKS SPALSDDLNS WMVQHPSALD
101: MFEQIISASK GKQIVMFLDY DGTLSPIVED PDQAFMSDAM RATVRKLARY FPTAIVSGRC RDKVYSFVRL AELYYAGSHG MDIKGPSKGS KYKKGAQAVL
201: FQPASEFLPM IDEVYKKLVD ITKSTEGVRV ENNKFCASVH FRCVDEKKWG ELAQVVRSVL KEYPKLRLTQ GRKVLEIRPT IKWDKGKALE FLLESLGYAN
301: CTDVFPVYIG DDRTDEDAFK VLRERDQGFG ILVSKTPKDT HASYSLQEPS EVMVFLRRLV EWKKLSLRRQ FRIRRQIEEM KASLRN

Best Arabidopsis Sequence Match ( AT5G65140.1 )
(BLAST)

001: MVSQNVVVSD AKTGIITVST VSNSSVFTPT AQKPPTAPGY ISVSKKKLLK NLEINGADQS QRLNSWVDSM RASSPTHLKS LSSFSSEEEH NSWIKRHPSA
101: LNMFERIIEE ARGKQIVMFL DYDGTLSPIV DDPDRAFMTS KMRRTVKKMA KCFPTSIVTG RCIDKVYSFV KLAELYYAGS HGMDIKGPTK GFSRYNKDKP
201: SVLYQPAGDF LPMIDEVYKQ LVEKTKSTPG AKVENNKFCL SVHFRCVDEK KWSELASKVR SVVKNYPTLK LSQGRKVFEI RPIIKWNKGK ALEFLLESLG
301: FENCNDVFPI YIGDDKTDED AFKLLRGRGQ GFGILVSKFP KDTSASYSLQ DPPEVMNFLG RLVEWKQMQQ

Arabidopsis Description

TPPJProbable trehalose-phosphate phosphatase J [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ05]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.