Factsheet for PGSC0003DMT400035869

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060600.1.1	Tomato	cytosol	85.51	92.77
PGSC0003DMT400012219	Potato	plastid	74.78	67.19
Bra013628.1-P	Field mustard	cytosol	61.45	66.04
AT4G12430.1	Thale cress	plastid	68.99	64.67
Bra019370.1-P	Field mustard	nucleus	66.09	62.98
CDX94103	Canola	nucleus	66.09	62.98
CDX98760	Canola	nucleus	66.09	62.98
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	71.01	62.34
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	70.72	62.09
PGSC0003DMT400056161	Potato	cytosol	38.26	61.68
KRH04085	Soybean	nucleus, plastid	64.35	61.33
PGSC0003DMT400035990	Potato	peroxisome, plastid	67.83	60.94
CDX82953	Canola	plastid	65.8	60.53
CDX79165	Canola	plastid	65.8	60.53
AT4G22590.1	Thale cress	plastid	66.09	60.48
CDX94101	Canola	cytosol	17.68	60.4
GSMUA_Achr1P01710_001	Banana	plastid	62.32	54.29
GSMUA_Achr5P19860_001	Banana	plastid	59.71	54.21
GSMUA_Achr5P15280_001	Banana	plastid	62.03	54.04
GSMUA_Achr5P13510_001	Banana	plastid	61.74	53.79
GSMUA_Achr2P18640_001	Banana	cytosol	51.01	53.01
GSMUA_Achr4P24650_001	Banana	cytosol	55.36	52.91
VIT_11s0037g00720.t01	Wine grape	nucleus	16.52	51.35
PGSC0003DMT400024511	Potato	peroxisome, plastid	53.62	50.68
PGSC0003DMT400053144	Potato	plastid	54.49	48.7
PGSC0003DMT400023513	Potato	cytosol, mitochondrion, plastid	45.22	47.42
PGSC0003DMT400090449	Potato	cytosol	39.71	46.76
PGSC0003DMT400095474	Potato	cytosol	28.41	46.23
CDX98758	Canola	cytosol, nucleus, peroxisome	17.68	40.67

Protein Annotations

MapMan:3.3.2	Gene3D:3.30.70.1020	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805
GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
UniProt:M1B2X4	PFAM:PF02358	EnsemblPlantsGene:PGSC0003DMG400013809	PGSC:PGSC0003DMG400013809	EnsemblPlants:PGSC0003DMT400035869	PANTHER:PTHR43768
PANTHER:PTHR43768:SF6	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI000295AA0A
SEG:seg	:	:	:	:	:

Description

Trehalose-6-phosphate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400013809]

Coordinates

chr6:-:43612037..43614115

Molecular Weight (calculated)

39305.1 Da

IEP (calculated)

7.908

GRAVY (calculated)

-0.338

Length

345 amino acids

Sequence
(BLAST)

001: MIPRKKPGRL DDVRSNGWLD AMKSSSPPSK KVQKEAGVED FSDDAKCGYS SWMFKYPSAL NSFQQIVNHA KNKKIVIFLD YDGTLSPIVD DPDRAFISAE
101: MRSAVRDVAK HFPTAIISGR SRDKVYQLVG LTELYYAGSH GMDIMLPIRN ELCTNDSLIK STDQQGKEVN LFQPAREFLP MIDEVFRTLV DKTKEVIGAK
201: VENHKFCASV HYRNVDENSW PILAQCVHDV LKEYPRLRQT HGRKVLEVRP VIDWDKGKAV EFLLDSLGFR NSHDVLPIYI GDDRTDEDAF KVLRGRYQGY
301: GILVSAIPKE SNAIFSLGDT SEVWNVTLYQ IFVVYVVEIM KVKCR

Best Arabidopsis Sequence Match ( AT4G12430.1 )
(BLAST)

001: MDLNSNHKSS VLKDPSPSVN QSRLGVSSRF MMSQWKKPAK LDDVRSNGWL DAMISSSPPR KKLVKDFNVE VAPEDDFAQR AWMVKYPSAI SSFAHIAAQA
101: KKKKIAVFLD YDGTLSPIVD DPDRAIMSDA MRSAVKDVAS YFPTAIISGR SRDKVYQLVG LTELYYAGSH GMDIMTSSDG PNCFKSTDQQ GKEVNLFQPA
201: REFIPVIDEV FRTLVEKMKD IKGAKVENHK FCASVHYRNV DEKDWPIIAQ RVHDHLKQYP RLRLTHGRKV LEVRPVIDWN KGRAVEFLLE SLGLSNKDDL
301: LPIYIGDDTT DEDAFKVLRD GNRGFGILVS SIPKESNAFY SLRDPSEVKK FLKTLVKWAK LEKNSTGF

Arabidopsis Description

TPPFProbable trehalose-phosphate phosphatase F [Source:UniProtKB/Swiss-Prot;Acc:Q9SU39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.