Factsheet for GSMUA_Achr4P24650_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
peroxisome 1
plastid 1
vacuole 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94101	Canola	cytosol	19.39	69.31
Bra013628.1-P	Field mustard	cytosol	54.85	61.68
GSMUA_Achr5P19860_001	Banana	plastid	62.88	59.74
Solyc06g060600.1.1	Tomato	cytosol	52.35	59.43
GSMUA_Achr1P01710_001	Banana	plastid	64.82	59.09
GSMUA_Achr5P13510_001	Banana	plastid	64.54	58.84
GSMUA_Achr2P18640_001	Banana	cytosol	53.46	58.13
Bra019370.1-P	Field mustard	nucleus	57.89	57.73
AT4G12430.1	Thale cress	plastid	58.73	57.61
GSMUA_Achr5P15280_001	Banana	plastid	63.16	57.58
CDX94103	Canola	nucleus	57.62	57.46
CDX98760	Canola	nucleus	57.62	57.46
AT4G22590.1	Thale cress	plastid	58.73	56.23
GSMUA_Achr9P12940_001	Banana	cytosol, peroxisome, plastid	43.21	56.12
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	60.39	55.47
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	60.39	55.47
CDX82953	Canola	plastid	57.62	55.47
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	52.91	55.36
CDX79165	Canola	plastid	57.34	55.2
KRH04085	Soybean	nucleus, plastid	54.29	54.14
Solyc08g079060.2.1	Tomato	plastid	56.79	53.11
PGSC0003DMT400012219	Potato	plastid	56.23	52.86
GSMUA_Achr2P22170_001	Banana	cytoskeleton, cytosol, peroxisome	45.71	49.7
GSMUA_Achr10P...	Banana	cytosol, plastid	45.15	47.94
CDX98758	Canola	cytosol, nucleus, peroxisome	19.67	47.33
GSMUA_Achr6P14300_001	Banana	cytosol, nucleus, peroxisome	45.98	47.03
GSMUA_Achr6P30350_001	Banana	plastid	46.26	46.65
GSMUA_Achr2P14790_001	Banana	cytosol	47.65	46.24
GSMUA_Achr4P24170_001	Banana	cytosol	48.75	45.83
GSMUA_Achr10P...	Banana	plastid	46.81	45.68
GSMUA_Achr4P01810_001	Banana	cytosol, peroxisome, plastid	47.37	45.6
GSMUA_Achr3P01660_001	Banana	cytosol, mitochondrion, plastid	48.2	44.73
GSMUA_AchrUn_...	Banana	peroxisome	45.98	44.5
VIT_11s0037g00720.t01	Wine grape	nucleus	13.57	44.14
GSMUA_Achr10P...	Banana	plastid	48.75	43.56
GSMUA_Achr7P11700_001	Banana	plastid	45.71	42.97
GSMUA_Achr2P18630_001	Banana	cytosol, peroxisome, plastid	25.21	40.62

Protein Annotations

MapMan:3.3.2	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975
GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr4G24650_001	EnsemblPlants:GSMUA_Achr4P24650_001	EnsemblPlants:GSMUA_Achr4T24650_001	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023214	UniProt:M0SRS6	PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF6
SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0002965615	SEG:seg

Description

CPuORF22 - conserved peptide uORF-containing transcript, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G24650_001]

Coordinates

chr4:+:24374173..24376498

Molecular Weight (calculated)

40793.6 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.152

Length

361 amino acids

Sequence
(BLAST)

001: MDLKATHSST ILTDRTHACN SRLCLPPIVK ASSGMLNESH DGACLDAMKS SSPPHIKLNK DFISDLAICK NDAAYDAWMM KCPSALSSFK QITNHAKYKK
101: IVLFLDYDGT LSHIVDNPEH AFMSNAMRTA VKNVAKYFST AIVSGRSCHK VYKFVKLGEL YYAGSHGMDI MGPVIKNESI IYCPHGNEVI LFQPAKEFLL
201: MINEVQVQSF LKEVTKDIEG VIVESNKFCV SVHYRLVDEK DWPKVVHCVH HVLKDYPHLQ VTHGRRVLEV RPIIDWNKGK AVEFLLEYLG LRTSDDVLPI
301: YVGDDRTDED AFKILREGKC GYGILVTSVP KQTNAVFSLR DPTEVKKFLK LLVKWKKLET S

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.