CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
peroxisome 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94101	Canola	cytosol	19.34	69.31
Bra013628.1-P	Field mustard	cytosol	58.29	65.73
Solyc06g060600.1.1	Tomato	cytosol	57.46	65.41
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	61.33	64.35
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	69.61	64.12
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	69.34	63.87
AT4G12430.1	Thale cress	plastid	63.26	62.23
Bra019370.1-P	Field mustard	nucleus	61.88	61.88
CDX94103	Canola	nucleus	61.88	61.88
CDX98760	Canola	nucleus	61.88	61.88
PGSC0003DMT400012219	Potato	plastid	64.36	60.68
KRH23805	Soybean	cytosol	65.19	60.67
KRH39976	Soybean	peroxisome	65.19	60.67
AT4G22590.1	Thale cress	plastid	62.98	60.48
Solyc08g079060.2.1	Tomato	plastid	64.09	60.1
CDX79165	Canola	plastid	61.6	59.47
CDX82953	Canola	plastid	61.33	59.2
KRH26019	Soybean	cytosol	15.19	57.89
GSMUA_Achr5P19860_001	Banana	plastid	60.5	57.63
KRH75558	Soybean	cytosol, extracellular, peroxisome	10.5	57.58
GSMUA_Achr1P01710_001	Banana	plastid	62.43	57.07
GSMUA_Achr2P18640_001	Banana	cytosol	52.21	56.93
KRH62612	Soybean	cytosol	59.94	56.81
GSMUA_Achr5P13510_001	Banana	plastid	61.6	56.31
KRH56343	Soybean	cytosol	60.22	55.61
GSMUA_Achr5P15280_001	Banana	plastid	60.77	55.56
GSMUA_Achr4P24650_001	Banana	cytosol	54.14	54.29
VIT_11s0037g00720.t01	Wine grape	nucleus	16.57	54.05
KRH59366	Soybean	plastid	52.21	52.21
KRH43210	Soybean	cytosol, nucleus, peroxisome	52.49	51.91
KRH49582	Soybean	mitochondrion	40.33	51.23
KRH30218	Soybean	plastid	30.11	50.93
KRH31279	Soybean	plastid	50.83	50.69
KRG97593	Soybean	plastid	50.28	49.86
KRH62370	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.17	47.98
KRH53087	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.72	47.37
CDX98758	Canola	cytosol, nucleus, peroxisome	19.61	47.33
KRH18894	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	48.34	47.04
KRG98938	Soybean	plastid	18.51	46.21
KRH16701	Soybean	cytosol, mitochondrion, peroxisome, plastid	48.34	46.17
KRH06490	Soybean	cytosol	39.5	45.69
KRH64499	Soybean	golgi, mitochondrion	43.92	43.32
KRH53451	Soybean	golgi, vacuole	43.09	42.51
KRH38605	Soybean	cytosol	37.02	25.92

Protein Annotations

EntrezGene:100791043	MapMan:3.3.2	Gene3D:3.40.50.1000	EMBL:ACUP02010379	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G138700
GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975	GO:GO:0005992	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB
InterPro:HAD-like_sf	InterPro:HAD_sf	UniProt:I1MUY1	InterPro:IPR023214	EnsemblPlants:KRH04085	ProteinID:KRH04085
ProteinID:KRH04085.1	PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF6	SUPFAM:SSF56784	TIGRFAMs:TIGR00685
TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI00029498E3	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:11248118..11252772

Molecular Weight (calculated)

41041.6 Da

IEP (calculated)

6.070

GRAVY (calculated)

-0.518

Length

362 amino acids

Sequence
(BLAST)

001: MHSSLQAYSE QDSPPSPGKG SRSNSRKSTG NVDDVRSNGW LDAMKASSPP RKKLIKGSSN QVASIDDDFE DYCSWMLEYP SALDSFEEII DLAMDKKIAM
101: FLDYDGTLSP IVDDPNCAFM SESMRSTVRS VAKHFPTAII SGRSRDKVFD LVKLTELYYA GSHGMDIIGP VSETLSKNHP NCVKSNDHPG KETTLFQPAR
201: EFLSMIDEIF RILVEITKDI QGAKVENHKF CVSVHYRNVE ENNWTTIGQR VHDVLKDYPL LRSTHGRKVL EVRPVIDWNK GKAVEFLLES LGLADRNDVL
301: PIYIGDDKTD EDAFKMLRES NRGYGILVSS VRKESNAFYS LRDPNEVMKF LQLLVNWKNQ ER

Best Arabidopsis Sequence Match ( AT4G12430.1 )
(BLAST)

001: MDLNSNHKSS VLKDPSPSVN QSRLGVSSRF MMSQWKKPAK LDDVRSNGWL DAMISSSPPR KKLVKDFNVE VAPEDDFAQR AWMVKYPSAI SSFAHIAAQA
101: KKKKIAVFLD YDGTLSPIVD DPDRAIMSDA MRSAVKDVAS YFPTAIISGR SRDKVYQLVG LTELYYAGSH GMDIMTSSDG PNCFKSTDQQ GKEVNLFQPA
201: REFIPVIDEV FRTLVEKMKD IKGAKVENHK FCASVHYRNV DEKDWPIIAQ RVHDHLKQYP RLRLTHGRKV LEVRPVIDWN KGRAVEFLLE SLGLSNKDDL
301: LPIYIGDDTT DEDAFKVLRD GNRGFGILVS SIPKESNAFY SLRDPSEVKK FLKTLVKWAK LEKNSTGF

Arabidopsis Description

TPPFProbable trehalose-phosphate phosphatase F [Source:UniProtKB/Swiss-Prot;Acc:Q9SU39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.