CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
peroxisome 1
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39976	Soybean	peroxisome	97.17	97.17
KRH62612	Soybean	cytosol	78.66	80.1
KRH56343	Soybean	cytosol	78.92	78.32
Solyc03g083960.2.1	Tomato	plastid	73.26	77.66
PGSC0003DMT400035990	Potato	peroxisome, plastid	76.35	77.34
VIT_16s0022g00660.t01	Wine grape	plastid	75.84	76.62
AT5G51460.3	Thale cress	nucleus, plastid	68.89	69.61
CDY56658	Canola	plastid	67.61	69.39
CDY66417	Canola	plastid	67.61	69.39
Bra022549.1-P	Field mustard	cytosol, plastid	67.1	68.87
HORVU4Hr1G036870.1	Barley	mitochondrion	37.02	67.61
CDY00477	Canola	plastid	66.07	66.58
Bra028254.1-P	Field mustard	plastid	65.3	66.49
HORVU2Hr1G075440.2	Barley	cytosol	22.36	66.41
CDX99919	Canola	plastid	65.55	65.89
KRH04085	Soybean	nucleus, plastid	60.67	65.19
KRH26019	Soybean	cytosol	15.42	63.16
HORVU2Hr1G104360.2	Barley	cytosol, peroxisome, plastid	47.81	62.84
TraesCS1D01G213700.1	Wheat	plastid	60.93	62.2
TraesCS1A01G210400.1	Wheat	plastid	60.93	62.2
Os10t0553300-01	Rice	cytosol, nucleus, peroxisome	60.67	61.78
EER91963	Sorghum	cytosol	59.64	60.73
Zm00001d047110_P001	Maize	cytosol	59.38	60.63
HORVU1Hr1G053770.2	Barley	plastid	59.64	59.18
KRH75558	Soybean	cytosol, extracellular, peroxisome	9.25	54.55
KRH49582	Soybean	mitochondrion	39.59	54.04
KRH30218	Soybean	plastid	29.56	53.74
KRH31279	Soybean	plastid	50.13	53.72
TraesCS1B01G224300.2	Wheat	golgi, vacuole	60.41	53.65
KRH59366	Soybean	plastid	49.61	53.31
KRG97593	Soybean	plastid	49.87	53.15
KRH43210	Soybean	cytosol, nucleus, peroxisome	49.87	53.01
KRH18894	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.87	52.15
KRH62370	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.36	51.75
KRH53087	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	49.87	51.05
KRH16701	Soybean	cytosol, mitochondrion, peroxisome, plastid	49.36	50.66
KRH06490	Soybean	cytosol	40.62	50.48
KRG98938	Soybean	plastid	18.25	48.97
KRH64499	Soybean	golgi, mitochondrion	46.02	48.77
KRH53451	Soybean	golgi, vacuole	45.24	47.96
GSMUA_Achr2P18630_001	Banana	cytosol, peroxisome, plastid	24.42	42.41
KRH38605	Soybean	cytosol	34.96	26.31

Protein Annotations

EntrezGene:100819495	MapMan:3.3.2	Gene3D:3.40.50.1000	EMBL:ACUP02007161	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G005200
GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975	GO:GO:0005992	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB
InterPro:HAD-like_sf	InterPro:HAD_sf	UniProt:I1LNS7	InterPro:IPR023214	EnsemblPlants:KRH23805	ProteinID:KRH23805
ProteinID:KRH23805.1	ProteinID:KRH23806.1	ProteinID:KRH23807.1	PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF6
SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI000233C181	:

Description

hypothetical protein

Coordinates

chr12:-:402705..408906

Molecular Weight (calculated)

43278.8 Da

IEP (calculated)

7.936

GRAVY (calculated)

-0.279

Length

389 amino acids

Sequence
(BLAST)

001: MDLKSNHTPV LTDAAPVTKS RLGVHSSLLP YSHAGTTFTH GMLLTIPRKK TGILEDVRSS GWLDAMKSSS PPARKITKDV GHGFASSDSE TAGAYFSWLL
101: KYPSALASFD QIMNYAKGKR IALFMDYDGT LSPIVDNPDC AFMSDNMRAA VKKVAEYFPT AIISGRSRDK VYQFVGLTEL YYAGSHGMDI IGPVRQSVSD
201: NHPNCIRSTD KQGKEVNLFQ PAAEFLPMIN EVLNSLEECT KDIKGAKVEN NKFCVSVHYR NVDEKYWDLV GQHVHDVLKG YPRLRLTHGR KVLEIRPVIN
301: WDKGKAVTFL LESLGLNNCD DVLPIYIGDD QTDEDAFKVL REGNKGYGIL VSSAPKESNA IYSLRDPSEV MEFLKSLVLW KSSTLKSLI

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.