CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028254.1-P	Field mustard	plastid	98.96	100.0
CDX99919	Canola	plastid	99.22	98.97
AT5G51460.3	Thale cress	nucleus, plastid	89.64	89.87
CDY66417	Canola	plastid	87.82	89.45
CDY56658	Canola	plastid	87.82	89.45
Solyc03g083960.2.1	Tomato	plastid	64.25	67.57
PGSC0003DMT400035990	Potato	peroxisome, plastid	66.58	66.93
VIT_16s0022g00660.t01	Wine grape	plastid	66.58	66.75
KRH23805	Soybean	cytosol	66.58	66.07
KRH39976	Soybean	peroxisome	66.58	66.07
HORVU2Hr1G075440.2	Barley	cytosol	21.5	63.36
KRH62612	Soybean	cytosol	61.92	62.57
CDX94101	Canola	cytosol	16.32	62.38
HORVU4Hr1G036870.1	Barley	mitochondrion	34.2	61.97
KRH56343	Soybean	cytosol	62.18	61.22
CDX98760	Canola	nucleus	55.7	59.39
CDY70318	Canola	mitochondrion	35.75	59.23
CDX94103	Canola	nucleus	55.44	59.12
HORVU2Hr1G104360.2	Barley	cytosol, peroxisome, plastid	44.82	58.45
CDX82953	Canola	plastid	56.48	58.13
TraesCS1A01G210400.1	Wheat	plastid	57.25	58.01
CDX79165	Canola	plastid	56.22	57.87
EER91963	Sorghum	cytosol	57.25	57.85
TraesCS1D01G213700.1	Wheat	plastid	56.99	57.74
Os10t0553300-01	Rice	cytosol, nucleus, peroxisome	56.74	57.33
Zm00001d047110_P001	Maize	cytosol	56.22	56.96
CDY26849	Canola	mitochondrion	33.94	56.22
HORVU1Hr1G053770.2	Barley	plastid	55.96	55.1
CDX90361	Canola	cytosol, peroxisome, plastid	47.41	51.69
TraesCS1B01G224300.2	Wheat	golgi, vacuole	56.99	50.23
CDY26848	Canola	plastid	48.96	49.87
CDY14635	Canola	plastid	48.7	49.87
CDY15842	Canola	cytosol	43.26	49.41
CDY39454	Canola	cytosol	30.83	49.38
CDX87477	Canola	plastid	48.19	49.21
CDX88416	Canola	plastid	47.67	48.68
CDY63411	Canola	cytosol	42.75	48.67
CDY22393	Canola	cytosol	45.6	47.44
CDX90831	Canola	mitochondrion	8.81	47.22
CDY08815	Canola	plastid	43.78	46.56
CDX72676	Canola	mitochondrion	45.6	46.19
CDY31283	Canola	plastid	44.3	45.6
CDX98758	Canola	cytosol, nucleus, peroxisome	16.84	43.33
GSMUA_Achr2P18630_001	Banana	cytosol, peroxisome, plastid	22.8	39.29
CDY14544	Canola	endoplasmic reticulum, plasma membrane	44.04	37.44
CDY37091	Canola	plastid	24.09	35.77

Protein Annotations

MapMan:3.3.2	Gene3D:3.30.70.1020	Gene3D:3.40.50.1000	GO:A0A078EH93	EnsemblPlants:CDY00477	ProteinID:CDY00477
ProteinID:CDY00477.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975	GO:GO:0005992
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00110181001
InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	PFAM:PF02358	PANTHER:PTHR43768
PANTHER:PTHR43768:SF6	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0004EF0AFB

Description

BnaA10g07960D

Coordinates

chrLK031919:+:523193..526743

Molecular Weight (calculated)

43048.4 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.259

Length

386 amino acids

Sequence
(BLAST)

001: MDIKSGHSSP VMTDSPQISN SRLTVRQSRL PPYSSATAVS QNNNLLLTVP RKKTGIIDDV KANAWLDAMI ASSPTPAIVD KDNISSSDAT TDMTYREWTV
101: KYPSALTTFE KIMSVAKGKR IALFLDYDGT LSPIVEEPDA AYMSSDMRTA VQNVAKYFPT AIISGRSRDK VYEFVGLSEL YYAGSHGMDI MSPAGESLNH
201: KHLSRTVSIN EQGKDVNLFQ TASEFLPMID KVLCSLVEST KDIKGVKVED NRFCISVHYR NVEEKNWTLV AQCVDDVIRT YPKLRLTYGR KVLEIRPVID
301: WDKGKAVTFL LESLGLNNCE DVLPIYVGDD RTDEDAFKVL RDGPNHGYGV LVSAMPKVSN AFYSLRDPSE VMEFLKALVT WKRSLG

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.