CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94101	Canola	cytosol	63.33	94.06
Bra019370.1-P	Field mustard	nucleus	64.67	26.8
CDX94103	Canola	nucleus	64.67	26.8
CDX98760	Canola	nucleus	64.0	26.52
CDX79165	Canola	plastid	63.33	25.33
CDX82953	Canola	plastid	63.33	25.33
CDY70318	Canola	mitochondrion	39.33	25.32
CDY26849	Canola	mitochondrion	38.67	24.89
AT4G22590.1	Thale cress	plastid	60.67	24.14
CDX90831	Canola	mitochondrion	10.67	22.22
GSMUA_Achr2P18640_001	Banana	cytosol	47.33	21.39
Solyc06g060600.1.1	Tomato	cytosol	42.67	20.13
GSMUA_Achr4P24650_001	Banana	cytosol	47.33	19.67
KRH04085	Soybean	nucleus, plastid	47.33	19.61
GSMUA_Achr5P19860_001	Banana	plastid	46.67	18.42
GSMUA_Achr5P15280_001	Banana	plastid	48.0	18.18
GSMUA_Achr1P01710_001	Banana	plastid	47.33	17.93
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	46.67	17.81
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	40.67	17.68
GSMUA_Achr5P13510_001	Banana	plastid	46.67	17.68
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	45.33	17.3
CDY56658	Canola	plastid	43.33	17.15
CDY66417	Canola	plastid	43.33	17.15
CDX90361	Canola	cytosol, peroxisome, plastid	40.0	16.95
Solyc08g079060.2.1	Tomato	plastid	43.33	16.84
CDY00477	Canola	plastid	43.33	16.84
CDX99919	Canola	plastid	43.33	16.8
CDY22393	Canola	cytosol	40.0	16.17
PGSC0003DMT400012219	Potato	plastid	41.33	16.15
CDY14635	Canola	plastid	40.0	15.92
CDX72676	Canola	mitochondrion	40.0	15.75
CDY26848	Canola	plastid	39.33	15.57
CDY15842	Canola	cytosol	34.67	15.38
CDX87477	Canola	plastid	38.67	15.34
CDY63411	Canola	cytosol	34.67	15.34
CDX88416	Canola	plastid	38.0	15.08
CDY31283	Canola	plastid	36.0	14.4
CDY08815	Canola	plastid	33.33	13.77
CDY14544	Canola	endoplasmic reticulum, plasma membrane	34.0	11.23
CDY37091	Canola	plastid	13.33	7.69
VIT_11s0037g00720.t01	Wine grape	nucleus	4.67	6.31
CDY39454	Canola	cytosol	2.0	1.24

Protein Annotations

Gene3D:3.40.50.1000	MapMan:35.1	GO:A0A078EHD6	EnsemblPlants:CDX98758	ProteinID:CDX98758	ProteinID:CDX98758.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00106834001	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF17	SUPFAM:SSF56784	TMHMM:TMhelix	InterPro:Trehalose_PPase
UniParc:UPI0004EEF70F	SEG:seg	:	:	:	:

Description

BnaA03g45430D

Coordinates

chrLK031906:-:1065795..1066368

Molecular Weight (calculated)

17440.2 Da

IEP (calculated)

4.978

GRAVY (calculated)

0.189

Length

150 amino acids

Sequence
(BLAST)

001: MIQVLEVRPV IEWNKGKAVE FLLESLGLSN NDDFLPIFIG DDKTDEDAFT RLREKKQGFG ILVSSVPKES NAFYSLRDPS EVKKFLKTLV KWRKMEDSTS
101: HLMICVGVSE EASFNSCFLF FFHILAFYIF NSLCYYIFEL IIFFSILSMN

Best Arabidopsis Sequence Match ( AT4G12430.1 )
(BLAST)

001: MDLNSNHKSS VLKDPSPSVN QSRLGVSSRF MMSQWKKPAK LDDVRSNGWL DAMISSSPPR KKLVKDFNVE VAPEDDFAQR AWMVKYPSAI SSFAHIAAQA
101: KKKKIAVFLD YDGTLSPIVD DPDRAIMSDA MRSAVKDVAS YFPTAIISGR SRDKVYQLVG LTELYYAGSH GMDIMTSSDG PNCFKSTDQQ GKEVNLFQPA
201: REFIPVIDEV FRTLVEKMKD IKGAKVENHK FCASVHYRNV DEKDWPIIAQ RVHDHLKQYP RLRLTHGRKV LEVRPVIDWN KGRAVEFLLE SLGLSNKDDL
301: LPIYIGDDTT DEDAFKVLRD GNRGFGILVS SIPKESNAFY SLRDPSEVKK FLKTLVKWAK LEKNSTGF

Arabidopsis Description

TPPFProbable trehalose-phosphate phosphatase F [Source:UniProtKB/Swiss-Prot;Acc:Q9SU39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.