Factsheet for PGSC0003DMT400012219

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g079060.2.1	Tomato	plastid	97.92	97.41
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	67.19	74.78
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	71.88	70.23
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	71.61	69.97
AT4G12430.1	Thale cress	plastid	66.41	69.29
CDX98760	Canola	nucleus	63.54	67.4
CDX94103	Canola	nucleus	63.54	67.4
Bra013628.1-P	Field mustard	cytosol	56.25	67.29
Bra019370.1-P	Field mustard	nucleus	63.28	67.13
PGSC0003DMT400035990	Potato	peroxisome, plastid	66.67	66.67
CDX82953	Canola	plastid	64.84	66.4
CDX79165	Canola	plastid	64.32	65.87
AT4G22590.1	Thale cress	plastid	64.32	65.52
KRH04085	Soybean	nucleus, plastid	60.68	64.36
CDX94101	Canola	cytosol	16.67	63.37
PGSC0003DMT400056161	Potato	cytosol	34.38	61.68
GSMUA_Achr1P01710_001	Banana	plastid	62.24	60.35
GSMUA_Achr5P15280_001	Banana	plastid	61.2	59.34
GSMUA_Achr5P13510_001	Banana	plastid	60.94	59.09
GSMUA_Achr5P19860_001	Banana	plastid	58.33	58.95
GSMUA_Achr4P24650_001	Banana	cytosol	52.86	56.23
GSMUA_Achr2P18640_001	Banana	cytosol	46.88	54.22
PGSC0003DMT400024511	Potato	peroxisome, plastid	48.96	51.51
VIT_11s0037g00720.t01	Wine grape	nucleus	14.58	50.45
PGSC0003DMT400053144	Potato	plastid	49.74	49.48
PGSC0003DMT400023513	Potato	cytosol, mitochondrion, plastid	40.36	47.11
PGSC0003DMT400090449	Potato	cytosol	35.16	46.08
PGSC0003DMT400095474	Potato	cytosol	24.48	44.34
CDX98758	Canola	cytosol, nucleus, peroxisome	16.15	41.33

Protein Annotations

EntrezGene:102580647	MapMan:3.3.2	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805
GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
UniProt:M1A0X3	PFAM:PF02358	EnsemblPlantsGene:PGSC0003DMG400004792	PGSC:PGSC0003DMG400004792	EnsemblPlants:PGSC0003DMT400012219	PANTHER:PTHR43768
PANTHER:PTHR43768:SF6	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI000296C2C9
RefSeq:XP_006355487.1	RefSeq:XP_015167885.1	:	:	:	:

Description

Trehalose-6-phosphate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400004792]

Coordinates

chr8:+:52684487..52691637

Molecular Weight (calculated)

43468.0 Da

IEP (calculated)

8.748

GRAVY (calculated)

-0.423

Length

384 amino acids

Sequence
(BLAST)

001: MDLNSAQASP VLTDPSPLNK SRLGIHSSLF PYSQSGPSFS TSVLSIPRKK PAKLDDVRSN GWLDAMKSSS PPRKKILKDV NIDVSSDDAD VTYLSWMIKY
101: PSALNCFQQI MRQARNKQIV IFLDYDGTLS PIVDDPDRAF MSNEMRSVVS NVAKYFPTTI ISGRRRDKVY ELVGLTELYY AGSHGMDIML PIKNTLSAND
201: SNCIKDTDQQ GKEVNLFQPA RKFLSMIDEV FKTLVEKTKD IKGAKVEHHK FCASVHYRNV DENNWSLIAQ YVHDVLKDYP RLRLTHGRKV LEVRPDIDWD
301: KGKAVEFLLQ SLGFSTPRDV LPIYIGDDRT DEDAFKVLRG KYKGYGILVS TTPKESNASF SLKDTSQVKK FLECLAKTME VDEI

Best Arabidopsis Sequence Match ( AT4G12430.1 )
(BLAST)

001: MDLNSNHKSS VLKDPSPSVN QSRLGVSSRF MMSQWKKPAK LDDVRSNGWL DAMISSSPPR KKLVKDFNVE VAPEDDFAQR AWMVKYPSAI SSFAHIAAQA
101: KKKKIAVFLD YDGTLSPIVD DPDRAIMSDA MRSAVKDVAS YFPTAIISGR SRDKVYQLVG LTELYYAGSH GMDIMTSSDG PNCFKSTDQQ GKEVNLFQPA
201: REFIPVIDEV FRTLVEKMKD IKGAKVENHK FCASVHYRNV DEKDWPIIAQ RVHDHLKQYP RLRLTHGRKV LEVRPVIDWN KGRAVEFLLE SLGLSNKDDL
301: LPIYIGDDTT DEDAFKVLRD GNRGFGILVS SIPKESNAFY SLRDPSEVKK FLKTLVKWAK LEKNSTGF

Arabidopsis Description

TPPFProbable trehalose-phosphate phosphatase F [Source:UniProtKB/Swiss-Prot;Acc:Q9SU39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.