Factsheet for VIT_02s0154g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
plastid 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	98.47	98.47
VIT_16s0022g00660.t01	Wine grape	plastid	73.79	75.32
AT4G12430.1	Thale cress	plastid	68.96	73.64
CDX98760	Canola	nucleus	67.43	73.2
CDX94103	Canola	nucleus	67.18	72.93
Solyc08g079060.2.1	Tomato	plastid	71.5	72.8
Bra019370.1-P	Field mustard	nucleus	66.92	72.65
Bra013628.1-P	Field mustard	cytosol	58.78	71.96
PGSC0003DMT400012219	Potato	plastid	70.23	71.88
Solyc06g060600.1.1	Tomato	cytosol	58.02	71.7
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	62.34	71.01
CDX82953	Canola	plastid	67.18	70.4
CDX94101	Canola	cytosol	18.07	70.3
CDX79165	Canola	plastid	66.92	70.13
AT4G22590.1	Thale cress	plastid	66.92	69.76
KRH04085	Soybean	nucleus, plastid	64.12	69.61
VIT_11s0037g00720.t01	Wine grape	nucleus	19.08	67.57
GSMUA_Achr1P01710_001	Banana	plastid	67.94	67.42
GSMUA_Achr5P19860_001	Banana	plastid	65.14	67.37
GSMUA_Achr5P15280_001	Banana	plastid	67.43	66.92
GSMUA_Achr5P13510_001	Banana	plastid	67.18	66.67
GSMUA_Achr2P18640_001	Banana	cytosol	51.15	60.54
GSMUA_Achr4P24650_001	Banana	cytosol	55.47	60.39
VIT_00s0304g00080.t01	Wine grape	cytosol, peroxisome	53.69	56.57
VIT_15s0046g01000.t01	Wine grape	cytosol, nucleus, peroxisome	39.44	53.63
VIT_18s0001g05300.t01	Wine grape	plastid	50.64	53.07
VIT_16s0050g02600.t01	Wine grape	mitochondrion	44.53	51.32
CDX98758	Canola	cytosol, nucleus, peroxisome	17.81	46.67

Protein Annotations

EntrezGene:100852434	wikigene:100852434	MapMan:3.3.2	Gene3D:3.40.50.1000	ProteinID:CCB56499	ProteinID:CCB56499.1
UniProt:F6HP93	EMBL:FN596001	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975
GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	EntrezGene:LOC100852434
wikigene:LOC100852434	PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF6	SUPFAM:SSF56784	TIGRFAMs:TIGR00685
TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI000210828A	ArrayExpress:VIT_02s0154g00110	EnsemblPlantsGene:VIT_02s0154g00110	EnsemblPlants:VIT_02s0154g00110.t01
RefSeq:XP_003631447	RefSeq:XP_003631447.1	RefSeq:XP_019073132.1	RefSeq:XP_019073135.1	:	:

Description

Trehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:F6HP93]

Coordinates

chr2:-:4898108..4901030

Molecular Weight (calculated)

43897.3 Da

IEP (calculated)

7.180

GRAVY (calculated)

-0.426

Length

393 amino acids

Sequence
(BLAST)

001: MDLKSNHASP VLTDPAPVNK SRLGIPSGLL PYSQPGTGFS SGKYVIIPRK KPGKLDDVRS NGWLDAMKSS SPPRKKLIKD FNVEVATDDT DNVTSSWMLK
101: YPSALNSFEK IISYAQSKKI AMFLDYDGTL SPIVDDPDRA LMSDAMRSTV KNLAKCFPTA IISGRSRDKV YELVGLKELY YAGSHGMDIM GPARYTACND
201: HSNCIKSSDE QGKEVNLFQP ASEFLPMIDE VFRALVETTR GIEGAKVENH KFCASVHYRN VDENSWSTIA QYVHDVLKDY PRLRLTHGRK VLEVRPVIDW
301: NKGKAVEFLL ESLGLTNSED VLPIYIGDDR TDEDAFKVLR EGNRGYGILV SPVPKETKAF YSLKDPSEVM EFLKSLVRWK ELDAPINSEG RGA

Best Arabidopsis Sequence Match ( AT4G12430.1 )
(BLAST)

001: MDLNSNHKSS VLKDPSPSVN QSRLGVSSRF MMSQWKKPAK LDDVRSNGWL DAMISSSPPR KKLVKDFNVE VAPEDDFAQR AWMVKYPSAI SSFAHIAAQA
101: KKKKIAVFLD YDGTLSPIVD DPDRAIMSDA MRSAVKDVAS YFPTAIISGR SRDKVYQLVG LTELYYAGSH GMDIMTSSDG PNCFKSTDQQ GKEVNLFQPA
201: REFIPVIDEV FRTLVEKMKD IKGAKVENHK FCASVHYRNV DEKDWPIIAQ RVHDHLKQYP RLRLTHGRKV LEVRPVIDWN KGRAVEFLLE SLGLSNKDDL
301: LPIYIGDDTT DEDAFKVLRD GNRGFGILVS SIPKESNAFY SLRDPSEVKK FLKTLVKWAK LEKNSTGF

Arabidopsis Description

TPPFProbable trehalose-phosphate phosphatase F [Source:UniProtKB/Swiss-Prot;Acc:Q9SU39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.