Factsheet for GSMUA_Achr5P15280_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P01710_001	Banana	plastid	83.33	83.33
GSMUA_Achr5P13510_001	Banana	plastid	81.31	81.31
CDX94101	Canola	cytosol	18.18	71.29
GSMUA_Achr5P19860_001	Banana	plastid	67.93	70.79
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	66.92	67.43
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	65.91	66.41
Bra013628.1-P	Field mustard	cytosol	53.03	65.42
AT4G12430.1	Thale cress	plastid	59.6	64.13
AT4G22590.1	Thale cress	plastid	60.61	63.66
GSMUA_Achr2P18640_001	Banana	cytosol	53.28	63.55
Bra019370.1-P	Field mustard	nucleus	57.83	63.26
CDX94103	Canola	nucleus	57.83	63.26
CDX98760	Canola	nucleus	57.83	63.26
Solyc06g060600.1.1	Tomato	cytosol	50.76	63.21
GSMUA_Achr4P24650_001	Banana	cytosol	57.58	63.16
CDX82953	Canola	plastid	59.6	62.93
CDX79165	Canola	plastid	59.6	62.93
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	54.04	62.03
PGSC0003DMT400012219	Potato	plastid	59.34	61.2
Solyc08g079060.2.1	Tomato	plastid	59.6	61.14
GSMUA_Achr9P12940_001	Banana	cytosol, peroxisome, plastid	42.68	60.79
KRH04085	Soybean	nucleus, plastid	55.56	60.77
GSMUA_Achr2P22170_001	Banana	cytoskeleton, cytosol, peroxisome	45.2	53.92
GSMUA_Achr10P...	Banana	cytosol, plastid	45.45	52.94
GSMUA_Achr10P...	Banana	plastid	48.23	51.62
GSMUA_Achr6P30350_001	Banana	plastid	45.71	50.56
GSMUA_Achr6P14300_001	Banana	cytosol, nucleus, peroxisome	44.7	50.14
GSMUA_Achr4P24170_001	Banana	cytosol	48.23	49.74
GSMUA_Achr2P14790_001	Banana	cytosol	46.21	49.19
GSMUA_Achr4P01810_001	Banana	cytosol, peroxisome, plastid	46.46	49.07
GSMUA_Achr7P11700_001	Banana	plastid	47.22	48.7
GSMUA_AchrUn_...	Banana	peroxisome	45.71	48.53
CDX98758	Canola	cytosol, nucleus, peroxisome	18.18	48.0
VIT_11s0037g00720.t01	Wine grape	nucleus	13.38	47.75
GSMUA_Achr3P01660_001	Banana	cytosol, mitochondrion, plastid	46.72	47.56
GSMUA_Achr10P...	Banana	plastid	46.21	45.3
GSMUA_Achr2P18630_001	Banana	cytosol, peroxisome, plastid	24.24	42.86

Protein Annotations

MapMan:3.3.2	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805	GO:GO:0005975
GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G15280_001	EnsemblPlants:GSMUA_Achr5P15280_001	EnsemblPlants:GSMUA_Achr5T15280_001	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf
InterPro:HAD_sf	InterPro:IPR023214	UniProt:M0SYQ7	PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF6
SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI000295E68B	SEG:seg

Description

CPuORF23 - conserved peptide uORF-containing transcript, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G15280_001]

Coordinates

chr5:+:11265693..11267955

Molecular Weight (calculated)

44290.8 Da

IEP (calculated)

7.035

GRAVY (calculated)

-0.304

Length

396 amino acids

Sequence
(BLAST)

001: MDLKSNHSSP VFTDPVHLSK SRLGLPSNIA PYSTAAQPYS SSGLCLQIPR RKVGKLDDVR ASGWLDAMKS SSPPRKKLSK DLISESQSDE TDAAYLTWMI
101: SCPSALNSFH IITTYAKCKS VVLFLDYDGT LSPIVDNPDA AFMSTAMRAA VKKAAKCFPT AIISGRSRDK VYEFVRLSEL CYAGSHGMDI MGPLRESEYV
201: GDHPDCIRTT DEQGKEVHLF QPASEFVPMI NEVYKSLLDI TKNIIGVKVE NNKFCVSVHY RNVDEKMWEE VGKHVFDLLK DFSRLQVTHG RKVLEVRPVI
301: DWNKGKAVEF LLESLGLSHR DDILPIYIGD DRTDEDAFKV LRDCNRGFGI LVSTVPKETN AFYSLRDPSE VQEFLKSLVR WKNSASSQTE GSTATV

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.