Factsheet for VIT_00s0233g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
plastid 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	98.47	98.47
VIT_16s0022g00660.t01	Wine grape	plastid	73.54	75.06
AT4G12430.1	Thale cress	plastid	68.7	73.37
CDX98760	Canola	nucleus	67.18	72.93
CDX94103	Canola	nucleus	66.92	72.65
Solyc08g079060.2.1	Tomato	plastid	71.25	72.54
Bra019370.1-P	Field mustard	nucleus	66.67	72.38
Bra013628.1-P	Field mustard	cytosol	58.52	71.65
PGSC0003DMT400012219	Potato	plastid	69.97	71.61
Solyc06g060600.1.1	Tomato	cytosol	57.76	71.38
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	62.09	70.72
CDX82953	Canola	plastid	66.92	70.13
CDX79165	Canola	plastid	66.67	69.87
AT4G22590.1	Thale cress	plastid	66.67	69.5
KRH04085	Soybean	nucleus, plastid	63.87	69.34
VIT_11s0037g00720.t01	Wine grape	nucleus	19.34	68.47
CDX94101	Canola	cytosol	17.56	68.32
GSMUA_Achr1P01710_001	Banana	plastid	67.43	66.92
GSMUA_Achr5P19860_001	Banana	plastid	64.38	66.58
GSMUA_Achr5P13510_001	Banana	plastid	66.67	66.16
GSMUA_Achr5P15280_001	Banana	plastid	66.41	65.91
GSMUA_Achr4P24650_001	Banana	cytosol	55.47	60.39
GSMUA_Achr2P18640_001	Banana	cytosol	50.64	59.94
VIT_00s0304g00080.t01	Wine grape	cytosol, peroxisome	54.2	57.1
VIT_18s0001g05300.t01	Wine grape	plastid	50.89	53.33
VIT_15s0046g01000.t01	Wine grape	cytosol, nucleus, peroxisome	38.42	52.25
VIT_16s0050g02600.t01	Wine grape	mitochondrion	44.27	51.03
CDX98758	Canola	cytosol, nucleus, peroxisome	17.3	45.33

Protein Annotations

EntrezGene:100254004	wikigene:100254004	MapMan:3.3.2	Gene3D:3.30.70.1020	Gene3D:3.40.50.1000	ProteinID:CCB50078
ProteinID:CCB50078.1	UniProt:F6HCY3	EMBL:FN595530	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805
GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
EntrezGene:LOC100254004	wikigene:LOC100254004	PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF6	SUPFAM:SSF56784
TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0002109E14	ArrayExpress:VIT_00s0233g00030	EnsemblPlantsGene:VIT_00s0233g00030
EnsemblPlants:VIT_00s0233g00030.t01	RefSeq:XP_002264471	RefSeq:XP_002264471.2	SEG:seg	:	:

Description

Trehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:F6HCY3]

Coordinates

chrUn:-:15980283..15983086

Molecular Weight (calculated)

43912.4 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.430

Length

393 amino acids

Sequence
(BLAST)

001: MDLKSNHASP VLTDPAPVNK SRLGIPSGLL PYSQPGTGFS SGKYVIIPRK KPGKLDDVRS NGWLDAMKSS SPPRKKLIKD FNVEVATDDT DNVTSSWMLK
101: YPSALNSFEK IISYAKSKKI AMFLDYDGTL SPIVDDPDRA LMSDAMRSTV KNLAKYFPTA IISGRSRDKV YELVGLKELY YAGSHGMDIM GPARYTACND
201: HSNCIKSSDD QGKKVNLFQP ASEFLPMIDE VFRALVETTR GIEGAKVENH KFCASVHYRN VDENSWSTIA QYVHDVLKDY PRLRLTHGRK VLEVRPVIDW
301: NKGKAVEFLL ESLGLTNSED VLPIYIGDDR TDEDAFKVLR EGNRGYGILV SPVPKETKAF YSLKDPAEVM EFLNSLVRWK ELDAPINSEG RGA

Best Arabidopsis Sequence Match ( AT4G12430.1 )
(BLAST)

001: MDLNSNHKSS VLKDPSPSVN QSRLGVSSRF MMSQWKKPAK LDDVRSNGWL DAMISSSPPR KKLVKDFNVE VAPEDDFAQR AWMVKYPSAI SSFAHIAAQA
101: KKKKIAVFLD YDGTLSPIVD DPDRAIMSDA MRSAVKDVAS YFPTAIISGR SRDKVYQLVG LTELYYAGSH GMDIMTSSDG PNCFKSTDQQ GKEVNLFQPA
201: REFIPVIDEV FRTLVEKMKD IKGAKVENHK FCASVHYRNV DEKDWPIIAQ RVHDHLKQYP RLRLTHGRKV LEVRPVIDWN KGRAVEFLLE SLGLSNKDDL
301: LPIYIGDDTT DEDAFKVLRD GNRGFGILVS SIPKESNAFY SLRDPSEVKK FLKTLVKWAK LEKNSTGF

Arabidopsis Description

TPPFProbable trehalose-phosphate phosphatase F [Source:UniProtKB/Swiss-Prot;Acc:Q9SU39]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.