Factsheet for GSMUA_Achr5P19860_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P01710_001	Banana	plastid	72.89	69.95
GSMUA_Achr5P13510_001	Banana	plastid	71.58	68.69
GSMUA_Achr5P15280_001	Banana	plastid	70.79	67.93
GSMUA_Achr2P18640_001	Banana	cytosol	58.95	67.47
CDX94101	Canola	cytosol	17.89	67.33
VIT_02s0154g00110.t01	Wine grape	nucleus, peroxisome, plastid	67.37	65.14
VIT_00s0233g00030.t01	Wine grape	nucleus, peroxisome, plastid	66.58	64.38
GSMUA_Achr4P24650_001	Banana	cytosol	59.74	62.88
AT4G12430.1	Thale cress	plastid	60.79	62.77
CDX94103	Canola	nucleus	59.47	62.43
CDX98760	Canola	nucleus	59.47	62.43
Bra013628.1-P	Field mustard	cytosol	52.63	62.31
Bra019370.1-P	Field mustard	nucleus	59.21	62.15
AT4G22590.1	Thale cress	plastid	60.79	61.27
CDX82953	Canola	plastid	60.26	61.07
CDX79165	Canola	plastid	59.74	60.53
KRH04085	Soybean	nucleus, plastid	57.63	60.5
Solyc06g060600.1.1	Tomato	cytosol	50.53	60.38
PGSC0003DMT400035869	Potato	cytosol, nucleus, peroxisome	54.21	59.71
Solyc08g079060.2.1	Tomato	plastid	59.74	58.81
PGSC0003DMT400012219	Potato	plastid	58.95	58.33
GSMUA_Achr9P12940_001	Banana	cytosol, peroxisome, plastid	42.63	58.27
GSMUA_Achr2P22170_001	Banana	cytoskeleton, cytosol, peroxisome	44.47	50.9
VIT_11s0037g00720.t01	Wine grape	nucleus	14.47	49.55
GSMUA_Achr10P...	Banana	cytosol, plastid	43.68	48.82
GSMUA_Achr4P24170_001	Banana	cytosol	49.21	48.7
GSMUA_Achr2P18630_001	Banana	cytosol, peroxisome, plastid	28.68	48.66
GSMUA_Achr10P...	Banana	plastid	47.37	48.65
GSMUA_Achr4P01810_001	Banana	cytosol, peroxisome, plastid	46.84	47.47
GSMUA_Achr7P11700_001	Banana	plastid	47.89	47.4
GSMUA_Achr6P14300_001	Banana	cytosol, nucleus, peroxisome	43.68	47.03
GSMUA_Achr6P30350_001	Banana	plastid	44.21	46.93
GSMUA_Achr2P14790_001	Banana	cytosol	45.79	46.77
CDX98758	Canola	cytosol, nucleus, peroxisome	18.42	46.67
GSMUA_AchrUn_...	Banana	peroxisome	45.0	45.84
GSMUA_Achr3P01660_001	Banana	cytosol, mitochondrion, plastid	45.26	44.22
GSMUA_Achr10P...	Banana	plastid	46.58	43.81

Protein Annotations

MapMan:3.3.2	Gene3D:3.30.70.1020	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805
GO:GO:0005975	GO:GO:0005992	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G19860_001	EnsemblPlants:GSMUA_Achr5P19860_001	EnsemblPlants:GSMUA_Achr5T19860_001	InterPro:HAD-SF_hydro_IIB
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	UniProt:M0T015	PFAM:PF02358	PANTHER:PTHR43768
PANTHER:PTHR43768:SF6	SUPFAM:SSF56784	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0002969757

Description

CPuORF23 - conserved peptide uORF-containing transcript, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G19860_001]

Coordinates

chr5:+:21471866..21474042

Molecular Weight (calculated)

42643.1 Da

IEP (calculated)

8.628

GRAVY (calculated)

-0.319

Length

380 amino acids

Sequence
(BLAST)

001: MDLKKNGSSP VLTDPAPLNS SRLGLPSNIK PYSSAAQAYS SGLYSTKPRR KAILGKLDDV RANGWLDAMK SSSPPRRQPN KDYISEPAID ENDMAYHKWL
101: MSYPSALTSF EQIISSAKCK KIALFLDYDG TLSPIVDNPD LAIMSNAMRS AVKHASECFP TAIISGRSRE KVYKFVKLTG LCYSGSHGMD IMCPVTNNHA
201: SFYHTGKEVH LFQPASEFLP MINEIFSSLV DITKDIVGAR VESNKFCVSV HYRLVNKEVW PEVAQRVVNL LEDYPRLRVT HGRKVLEIRP VIDWNKGKAV
301: EFLLESLGLS NREDVLSIYV GDDRTDEDAF EVLRESNRGY GILVSSIPKE TNAFYSLRDT SEVMKFLKSL VRWKKLDGDA

Best Arabidopsis Sequence Match ( AT5G51460.4 )
(BLAST)

001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMLK
101: YPSALTSFEK IMSFAKGKRI ALFLDYDGTL SPIVEEPDCA YMSSAMRSAV QNVAKYFPTA IISGRSRDKV YEFVNLSELY YAGSHGMDIM SPAGESLNHE
201: HSRTVSVYEQ GKDVNLFQPA SEFLPMIDKV LCSLIESTKD IKGVKVEDNK FCISVHYRNV EEKNWTLVAQ CVDDVIRTYP KLRLTHGRKV LEIRPVIDWD
301: KGKAVTFLLE SLGLNNCEDV LPIYVGDDRT DEDAFKVLRD GPNHGYGILV SAVPKDSNAF YSLRDPSEVM EFLKSLVTWK RSMG

Arabidopsis Description

TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.