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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • peroxisome 1
  • vacuole 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, vacuole
BaCelLo:nucleus
MultiLoc:mitochondrion
Plant-mPloc:peroxisome, vacuole
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400023513 Potato cytosol, mitochondrion, plastid 95.24 97.26
VIT_16s0050g02600.t01 Wine grape mitochondrion 59.52 58.65
GSMUA_Achr6P14300_001 Banana cytosol, nucleus, peroxisome 56.25 53.54
Solyc04g082550.1.1 Tomato cytosol 46.43 53.24
KRH64499 Soybean golgi, mitochondrion 55.95 51.23
KRH53451 Soybean golgi, vacuole 55.36 50.68
Solyc06g060600.1.1 Tomato cytosol 47.62 50.31
Solyc04g054930.2.1 Tomato cytosol, peroxisome, plastid 46.73 49.53
Solyc03g083960.2.1 Tomato plastid 48.51 44.41
Solyc05g051880.2.1 Tomato plastid 35.71 42.86
Solyc04g072920.2.1 Tomato extracellular 46.43 42.74
Solyc08g079060.2.1 Tomato plastid 47.32 41.19
Protein Annotations
MapMan:3.3.2Gene3D:3.40.50.1000ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0004805
GO:GO:0005975GO:GO:0005992GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016311GO:GO:0016787InterPro:HAD-SF_hydro_IIBInterPro:HAD-like_sfInterPro:HAD_sfInterPro:IPR023214
UniProt:K4BEF2PFAM:PF02358PANTHER:PTHR43768PANTHER:PTHR43768:SF4SUPFAM:SSF56784EnsemblPlantsGene:Solyc03g007290.2
EnsemblPlants:Solyc03g007290.2.1TIGRFAMs:TIGR00685TIGRFAMs:TIGR01484InterPro:Trehalose_PPaseUniParc:UPI0002767F71:
Description
Trehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:K4BEF2]
Coordinates
chr3:+:1859030..1861212
Molecular Weight (calculated)
37773.2 Da
IEP (calculated)
5.307
GRAVY (calculated)
-0.322
Length
336 amino acids
Sequence
(BLAST)
001: MGFQNGLART QRIESISKAT KLNKTEPKEE SKPADQMDIS TDVKYISWLK EHPSALSSFE EMMDVAKGKW VVVFLDYDGT LSPIVNDPER AFMSDMMRSA
101: VRDVAKLYPT AIISGRSRQK VYGFVKLDDV FYAGSHGMDI MGPAIQASCY DGKYQSKALD QKGNELTVFQ PAQDFLPSIE KMLNELEETT SEINGALVED
201: NRFCISVHYR HVLQEDLGLL EKKVQTLVAK YPGFHLTRGK KVIEIRPSIK WNKGDALVYL LETLGFTNSS DVLPIYIGDD KTDEDAFKVL NSREQGCPII
301: VSSNPRDTMA SYSLRDPSEV LSFLIRLARW GEVSAV
Best Arabidopsis Sequence Match ( AT5G51460.1 )
(BLAST)
001: MDMKSGHSSP VMTDSPPISN SRLTIRQNRL PYSSAAATAI SQNNNLLLTV PRKKTGILDD VKSNGWLDAM KSSSPPPTIL NKDNLSNDAT DMTYREWMQL
101: KYPSALTSFE KIMSFAKGKR IALFLDYDGT LSPIVEEPDC AYMSSAMRSA VQNVAKYFPT AIISGRSRDK VYEFVNLSEL YYAGSHGMDI MSPAGESLNH
201: EHSRTVSVYE QGKDVNLFQP ASEFLPMIDK VLCSLIESTK DIKGVKVEDN KFCISVHYRN VEEKNWTLVA QCVDDVIRTY PKLRLTHGRK VLEIRPVIDW
301: DKGKAVTFLL ESLGLNNCED VLPIYVGDDR TDEDAFKVLR DGPNHGYGIL VSAVPKDSNA FYSLRDPSEV MEFLKSLVTW KRSMG
Arabidopsis Description
TPPATrehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178UCG0]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.