Factsheet for Solyc04g072920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 4
peroxisome 2
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024511	Potato	peroxisome, plastid	97.53	97.53
Solyc04g054930.2.1	Tomato	cytosol, peroxisome, plastid	60.0	69.09
VIT_18s0001g05300.t01	Wine grape	plastid	68.77	66.93
CDY26849	Canola	mitochondrion	42.47	66.52
Solyc05g051880.2.1	Tomato	plastid	48.49	63.21
Zm00001d052227_P001	Maize	cytosol	61.1	62.64
KRH30218	Soybean	plastid	36.71	62.62
AT1G35910.1	Thale cress	plastid	63.01	62.33
KXG30780	Sorghum	cytosol	62.47	61.29
KRH62370	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	62.19	61.19
Bra015631.1-P	Field mustard	plastid	63.29	61.11
Os02t0753000-01	Rice	cytosol	61.37	61.04
CDX87477	Canola	plastid	63.01	60.85
GSMUA_Achr2P22170_001	Banana	cytoskeleton, cytosol, peroxisome	55.34	60.84
KRH49582	Soybean	mitochondrion	47.4	60.7
GSMUA_Achr10P...	Banana	cytosol, plastid	56.44	60.59
KRH53087	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	62.74	60.26
KRH18894	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	61.37	60.22
CDY14635	Canola	plastid	62.19	60.21
TraesCS6D01G281100.1	Wheat	plastid	60.55	59.89
CDX88416	Canola	plastid	61.92	59.79
Zm00001d032298_P002	Maize	plastid	60.82	59.68
Bra008344.1-P	Field mustard	plastid	61.37	59.42
HORVU6Hr1G074960.2	Barley	cytosol	60.82	59.2
CDY26848	Canola	plastid	61.37	59.1
Zm00001d006913_P002	Maize	plastid	53.15	58.97
Os08t0409100-01	Rice	peroxisome	59.73	58.92
Os03t0386500-01	Rice	cytosol, extracellular, peroxisome	49.86	58.71
EES13815	Sorghum	peroxisome	60.27	58.51
KRH16701	Soybean	cytosol, mitochondrion, peroxisome, plastid	60.55	58.31
GSMUA_Achr2P14790_001	Banana	cytosol	59.18	58.06
TraesCS5D01G200800.1	Wheat	plastid	58.9	57.64
TraesCS5A01G190000.1	Wheat	plastid	58.9	57.64
GSMUA_Achr4P24170_001	Banana	cytosol	60.27	57.29
TraesCS2B01G187100.1	Wheat	cytosol, plastid	55.89	56.98
TraesCS2A01G161000.1	Wheat	plastid	55.62	56.86
TraesCS2B01G187200.1	Wheat	cytosol, plastid	55.62	56.7
TraesCS2A01G161100.1	Wheat	cytosol, plastid	55.62	56.7
EER97568	Sorghum	cytosol, plastid	55.07	56.62
Solyc06g060600.1.1	Tomato	cytosol	49.32	56.6
Zm00001d018082_P001	Maize	cytosol	61.64	56.53
TraesCS7D01G182600.1	Wheat	peroxisome, plastid	56.16	56.47
TraesCS2A01G161200.1	Wheat	cytosol, plastid	55.34	56.42
GSMUA_Achr7P11700_001	Banana	plastid	59.18	56.25
EER97569	Sorghum	cytosol, plastid	54.52	56.21
EER96661	Sorghum	plastid	58.63	56.17
HORVU7Hr1G037140.1	Barley	plastid	55.62	56.08
TraesCS2D01G168100.1	Wheat	cytosol, plastid	54.52	55.59
TraesCS7B01G085800.1	Wheat	peroxisome, plastid	55.34	55.49
TraesCS2D01G168200.1	Wheat	cytosol, plastid	54.25	55.31
Os09t0369400-01	Rice	plastid	56.71	55.2
TraesCS7A01G180800.1	Wheat	peroxisome, plastid	54.52	55.12
Zm00001d005658_P001	Maize	plastid	57.81	54.95
GSMUA_Achr3P01660_001	Banana	cytosol, mitochondrion, plastid	58.36	54.76
TraesCS2B01G187000.1	Wheat	peroxisome, plastid	53.42	54.47
TraesCS6B01G330900.1	Wheat	cytosol	60.55	54.3
Zm00001d022192_P002	Maize	plastid	54.79	54.05
EER94771	Sorghum	cytosol, peroxisome, plastid	53.97	53.68
KXG36741	Sorghum	cytosol	53.42	53.57
Solyc03g083960.2.1	Tomato	plastid	53.7	53.41
TraesCS6A01G301800.1	Wheat	cytosol, nucleus, peroxisome, plastid	60.55	53.12
Zm00001d029371_P001	Maize	cytosol	52.88	53.02
Zm00001d020272_P001	Maize	peroxisome, plastid	57.53	52.63
TraesCS2D01G168300.1	Wheat	peroxisome, plastid	55.62	51.79
TraesCS5B01G193100.2	Wheat	plastid	58.63	51.57
KXG19623	Sorghum	cytosol	54.25	51.16
Os07t0624600-01	Rice	cytosol	51.23	51.09
HORVU2Hr1G029290.1	Barley	golgi, mitochondrion, peroxisome, plastid	56.16	50.62
Zm00001d022193_P001	Maize	cytosol	52.6	50.53
Solyc04g082550.1.1	Tomato	cytosol	40.55	50.51
HORVU5Hr1G058300.1	Barley	plastid	58.9	50.35
Solyc08g079060.2.1	Tomato	plastid	52.05	49.22
HORVU1Hr1G061580.4	Barley	plastid	26.3	47.29
Solyc03g007290.2.1	Tomato	cytosol, mitochondrion, nucleus	42.74	46.43
Zm00001d044854_P001	Maize	cytosol	49.32	41.96
Bra034400.1-P	Field mustard	plastid	26.58	37.31
CDY37091	Canola	plastid	26.58	37.31
HORVU6Hr1G066240.1	Barley	plastid	14.79	37.24

Protein Annotations

MapMan:3.3.2	Gene3D:3.30.70.1020	Gene3D:3.40.50.1000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004805
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005992
GO:GO:0006950	GO:GO:0006970	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0015927
GO:GO:0016311	GO:GO:0016787	InterPro:HAD-SF_hydro_IIB	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214
UniProt:K4BTS9	PFAM:PF02358	PANTHER:PTHR43768	PANTHER:PTHR43768:SF2	SUPFAM:SSF56784	EnsemblPlantsGene:Solyc04g072920.2
EnsemblPlants:Solyc04g072920.2.1	TIGRFAMs:TIGR00685	TIGRFAMs:TIGR01484	InterPro:Trehalose_PPase	UniParc:UPI0002767197	SEG:seg

Description

Trehalose 6-phosphate phosphatase [Source:UniProtKB/TrEMBL;Acc:K4BTS9]

Coordinates

chr4:+:59909039..59911234

Molecular Weight (calculated)

41319.5 Da

IEP (calculated)

9.764

GRAVY (calculated)

-0.464

Length

365 amino acids

Sequence
(BLAST)

001: MTNQNVIISD PRSGFDSSLL SLSPAVPGPL PQPGRFIAVP AKRSFKNIDS TDAARITALL DSMRASSPTR RSSETENLNS WIVHHPSALN MFDEIINSSK
101: GKQIVVFLDY DGTLSPIVDD PDKAFMTCEM REAVRNTSKY FPTAIVSGRC RAKVFNFVKL SELYYAGSHG MDIKAPVKGR NYRKGNNQTV LCQPAREFLP
201: MISEVYKSLV EKTKSIPGAK VENNKFCLSV HFRRVEEKRW TELAEQVKSV TKEYPTLRLT QGRKVLEIRP SIKWDKGNAL EFLLESLGYA NSNDVLPIYI
301: GDDRTDEDAF KVLRDRGQGF GILVSKSPKE TNATYSLQEP LEVMYFLNRL VEWKQSSLQQ KYQKK

Best Arabidopsis Sequence Match ( AT5G65140.1 )
(BLAST)

001: MVSQNVVVSD AKTGIITVST VSNSSVFTPT AQKPPTAPGY ISVSKKKLLK NLEINGADQS QRLNSWVDSM RASSPTHLKS LSSFSSEEEH NSWIKRHPSA
101: LNMFERIIEE ARGKQIVMFL DYDGTLSPIV DDPDRAFMTS KMRRTVKKMA KCFPTSIVTG RCIDKVYSFV KLAELYYAGS HGMDIKGPTK GFSRYNKDKP
201: SVLYQPAGDF LPMIDEVYKQ LVEKTKSTPG AKVENNKFCL SVHFRCVDEK KWSELASKVR SVVKNYPTLK LSQGRKVFEI RPIIKWNKGK ALEFLLESLG
301: FENCNDVFPI YIGDDKTDED AFKLLRGRGQ GFGILVSKFP KDTSASYSLQ DPPEVMNFLG RLVEWKQMQQ

Arabidopsis Description

TPPJProbable trehalose-phosphate phosphatase J [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ05]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.