Factsheet for Solyc02g086820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001297	Potato	cytosol, extracellular, plastid	98.75	98.75
Solyc02g067750.2.1	Tomato	plastid	58.26	73.33
GSMUA_Achr3P31010_001	Banana	cytosol	44.55	71.14
GSMUA_Achr7P26920_001	Banana	cytosol	42.06	67.16
Solyc05g005490.2.1	Tomato	plastid	55.76	66.79
GSMUA_Achr1P13950_001	Banana	cytosol	40.5	64.68
Zm00001d044095_P001	Maize	extracellular	38.32	61.5
KXG32976	Sorghum	cytosol	38.01	60.4
KXG32973	Sorghum	cytosol	37.69	59.31
VIT_17s0000g08450.t01	Wine grape	cytosol	47.66	59.07
TraesCS7B01G354800.1	Wheat	cytosol	36.76	58.42
TraesCS7D01G443400.1	Wheat	cytosol	36.45	57.92
VIT_17s0000g08460.t01	Wine grape	cytosol	47.04	57.85
KRH54402	Soybean	cytosol	46.42	57.09
GSMUA_Achr4P14900_001	Banana	plastid	47.04	56.77
TraesCS7D01G443500.1	Wheat	cytosol	34.27	55.56
GSMUA_Achr9P07050_001	Banana	plastid	44.24	54.41
Zm00001d011454_P001	Maize	plastid	40.81	53.47
GSMUA_Achr6P27350_001	Banana	plasma membrane, plastid	44.86	53.14
VIT_11s0065g00100.t01	Wine grape	cytosol	31.78	52.85
Zm00001d044096_P001	Maize	cytosol	38.32	51.46
HORVU3Hr1G057090.2	Barley	plastid	41.12	50.38
TraesCS3D01G223300.1	Wheat	plastid	40.19	50.0
TraesCS3A01G230000.2	Wheat	plastid	40.19	49.81
TraesCS3B01G259300.1	Wheat	golgi, plastid	39.88	49.61
TraesCS7A01G454500.1	Wheat	cytosol	32.71	49.3
TraesCS3A01G230100.1	Wheat	cytosol, plastid	38.32	49.2
TraesCS3B01G259400.1	Wheat	cytosol, plastid	37.69	48.4
TraesCS3D01G223200.1	Wheat	cytosol, plastid	37.38	48.0
HORVU3Hr1G056990.2	Barley	cytosol, plastid	37.38	48.0
TraesCS7A01G454300.1	Wheat	extracellular, plastid	36.45	47.56
TraesCS7B01G354900.1	Wheat	plastid	36.14	47.54
TraesCS7A01G454400.1	Wheat	plastid	35.2	47.28
KXG32978	Sorghum	cytosol, extracellular, plastid	37.07	46.48
Os01t0639900-01	Rice	extracellular, nucleus	39.25	46.32
Os01t0640000-00	Rice	plastid	29.91	40.51
Solyc09g010970.2.1	Tomato	mitochondrion, plastid	34.89	39.86
VIT_17s0000g08470.t01	Wine grape	plastid	19.0	36.09
HORVU7Hr1G103870.12	Barley	cytosol, plastid	37.69	32.97
Zm00001d044099_P002	Maize	plastid	41.12	29.2
KXG32970	Sorghum	cytosol	40.5	29.02

Protein Annotations

KEGG:00910+4.2.1.1	Gene3D:3.40.1050.10	MapMan:35.1	EMBL:AJ849376	InterPro:Carbonic_anhydrase	InterPro:Carbonic_anhydrase_CS
InterPro:Carbonic_anhydrase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004089	GO:GO:0005488	GO:GO:0008150
GO:GO:0008270	GO:GO:0015976	GO:GO:0016829	InterPro:IPR036874	EMBL:LN999514	PFAM:PF00484
ScanProsite:PS00704	ScanProsite:PS00705	PANTHER:PTHR11002	PANTHER:PTHR11002:SF27	UniProt:Q5NE20	SMART:SM00947
SUPFAM:SSF53056	EnsemblPlantsGene:Solyc02g086820.2	EnsemblPlants:Solyc02g086820.2.1	UniParc:UPI000049ADBE	SEG:seg	:

Description

Carbonic anhydrase [Source:UniProtKB/TrEMBL;Acc:Q5NE20]

Coordinates

chr2:+:49434625..49438076

Molecular Weight (calculated)

34469.6 Da

IEP (calculated)

7.137

GRAVY (calculated)

0.013

Length

321 amino acids

Sequence
(BLAST)

001: MSTASINNCL TLSPAQASLK KPTRPVAFAR LGNSSSSSSI PSLIRNEPVF AAPTPIINPI VREEMAKESY DQAIAALEKL LSEKAELGPV AAARVDQITA
101: ELKSADGGKA FDPVEHMKAG FIHFKTEKYD TNPALYGELA KGQSPKFMVF ACSDSRVCPS HVLNFQPGEA FMVRNIANMV PAYDKVRYSG VGAAIEYAVL
201: HLKVENIVVI GHSACGGIKG LMSLPEDGSE STAFIEDWVK ICLPAKAKVL ADHGGKEFAH QCTACEKEAV NVSLGNLLTY PFVREGLVKK TLALKGGYYD
301: FVKGGFELWG LEFGLSPPLS V

Best Arabidopsis Sequence Match ( AT3G01500.3 )
(BLAST)

001: MSTAPLSGFF LTSLSPSQSS LQKLSLRTSS TVACLPPASS SSSSSSSSSS RSVPTLIRNE PVFAAPAPII APYWSEEMGT EAYDEAIEAL KKLLIEKEEL
101: KTVAAAKVEQ ITAALQTGTS SDKKAFDPVE TIKQGFIKFK KEKYETNPAL YGELAKGQSP KYMVFACSDS RVCPSHVLDF QPGDAFVVRN IANMVPPFDK
201: VKYGGVGAAI EYAVLHLKVE NIVVIGHSAC GGIKGLMSFP LDGNNSTDFI EDWVKICLPA KSKVISELGD SAFEDQCGRC EREAVNVSLA NLLTYPFVRE
301: GLVKGTLALK GGYYDFVKGA FELWGLEFGL SETSSV

Arabidopsis Description

BCA1Beta carbonic anhydrase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P27140]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.