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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400079571 Potato cytosol 93.66 98.05
VIT_01s0127g00720.t01 Wine grape cytosol 71.64 75.0
KRG99341 Soybean nucleus 67.16 74.69
KRH45667 Soybean nucleus 70.52 72.97
GSMUA_Achr7P26920_001 Banana cytosol 52.99 70.65
GSMUA_Achr3P31010_001 Banana cytosol 52.61 70.15
KRH74596 Soybean nucleus 72.39 69.78
GSMUA_Achr1P13950_001 Banana cytosol 51.87 69.15
KRH69565 Soybean nucleus 71.64 69.06
Bra016223.1-P Field mustard cytosol 66.04 68.6
Bra007912.1-P Field mustard cytosol 65.67 68.22
CDY69444 Canola cytosol 65.67 68.22
CDY25799 Canola cytosol 62.31 64.48
CDY64836 Canola plastid 48.13 64.18
Bra012384.1-P Field mustard cytosol 61.57 63.95
CDY28477 Canola cytosol 61.57 63.71
CDY57847 Canola plastid 66.42 63.57
Solyc02g067750.2.1 Tomato plastid 60.45 63.53
CDY57304 Canola cytosol 66.04 63.21
CDY03752 Canola cytosol 66.04 63.21
AT1G23730.2 Thale cress cytosol 60.82 63.18
AT1G70410.2 Thale cress cytosol 65.67 62.86
CDX93638 Canola cytosol 52.61 62.39
Bra018699.1-P Field mustard cytosol 52.24 61.95
Bra018698.1-P Field mustard cytosol 59.7 61.78
CDX93637 Canola cytosol 51.49 61.61
CDY61543 Canola cytosol 58.21 60.23
KXG32976 Sorghum cytosol 45.15 59.9
Bra024615.1-P Field mustard cytosol 57.84 59.85
CDY64834 Canola cytosol 57.09 59.07
Zm00001d044095_P001 Maize extracellular 44.03 59.0
CDY47630 Canola cytosol 51.49 58.72
GSMUA_Achr9P07050_001 Banana plastid 54.85 56.32
Solyc02g086820.2.1 Tomato plastid 66.79 55.76
TraesCS7D01G443500.1 Wheat cytosol 41.04 55.56
KXG32973 Sorghum cytosol 42.16 55.39
TraesCS7D01G443400.1 Wheat cytosol 41.42 54.95
TraesCS7B01G354800.1 Wheat cytosol 41.04 54.46
GSMUA_Achr6P27350_001 Banana plasma membrane, plastid 54.1 53.51
GSMUA_Achr4P14900_001 Banana plastid 52.99 53.38
Zm00001d011454_P001 Maize plastid 45.52 49.8
Zm00001d044096_P001 Maize cytosol 43.28 48.54
TraesCS7A01G454500.1 Wheat cytosol 37.31 46.95
TraesCS7B01G354900.1 Wheat plastid 42.54 46.72
TraesCS7A01G454400.1 Wheat plastid 41.42 46.44
TraesCS3A01G230100.1 Wheat cytosol, plastid 43.28 46.4
TraesCS3D01G223200.1 Wheat cytosol, plastid 42.54 45.6
TraesCS3B01G259400.1 Wheat cytosol, plastid 42.54 45.6
TraesCS3D01G223300.1 Wheat plastid 43.66 45.35
HORVU3Hr1G056990.2 Barley cytosol, plastid 42.16 45.2
TraesCS3A01G230000.2 Wheat plastid 43.66 45.17
TraesCS7A01G454300.1 Wheat extracellular, plastid 41.42 45.12
TraesCS3B01G259300.1 Wheat golgi, plastid 43.28 44.96
HORVU3Hr1G057090.2 Barley plastid 43.66 44.66
KXG32978 Sorghum cytosol, extracellular, plastid 42.16 44.14
Os01t0639900-01 Rice extracellular, nucleus 42.54 41.91
Solyc09g010970.2.1 Tomato mitochondrion, plastid 42.54 40.57
Os01t0640000-00 Rice plastid 34.7 39.24
HORVU7Hr1G103870.12 Barley cytosol, plastid 42.16 30.79
Zm00001d044099_P002 Maize plastid 44.78 26.55
KXG32970 Sorghum cytosol 43.66 26.12
Protein Annotations
KEGG:00910+4.2.1.1Gene3D:3.40.1050.10MapMan:35.1EMBL:AJ849375InterPro:Carbonic_anhydraseInterPro:Carbonic_anhydrase_CS
InterPro:Carbonic_anhydrase_sfncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0004089GO:GO:0005488
GO:GO:0008150GO:GO:0008270GO:GO:0015976GO:GO:0016829InterPro:IPR036874PFAM:PF00484
ScanProsite:PS00704ScanProsite:PS00705PANTHER:PTHR11002PANTHER:PTHR11002:SF38UniProt:Q5NE21SMART:SM00947
SUPFAM:SSF53056EnsemblPlantsGene:Solyc05g005490.2EnsemblPlants:Solyc05g005490.2.1UniParc:UPI000049ADBDSEG:seg:
Description
Carbonic anhydrase [Source:UniProtKB/TrEMBL;Acc:Q5NE21]
Coordinates
chr5:-:355897..361496
Molecular Weight (calculated)
29525.2 Da
IEP (calculated)
5.699
GRAVY (calculated)
-0.253
Length
268 amino acids
Sequence
(BLAST)
001: MTLFSTSREV TKMAEDSYED AIAGLKKLLS EKNELEDTAA AKIRQLTAEL EGADGKKSDP DEKIRSGFAH FKAEKYEKNP ELFGQLAKGQ SPKFLVFACS
101: DSRVCPSHIL NFQPGEAFVV RNIANMVPPY DQTKYSGVGA AVEYAVVHLK VENILVIGHS CCGGIKGLMS IPDDGSTKSD FIEEWVKICS TAKAKVKAEF
201: CDLDHSEQCT KLEKEAVNVS LGNLLTYPFV REAVVKKNIA LKGGHYDFEN GSFELWNIDF KLTPSVAL
Best Arabidopsis Sequence Match ( AT1G70410.2 )
(BLAST)
001: MAPAFGKCFM FCCAKTSPEK DEMATESYEA AIKGLNDLLS TKADLGNVAA AKIKALTAEL KELDSSNSDA IERIKTGFTQ FKTEKYLKNS TLFNHLAKTQ
101: TPKFLVFACS DSRVCPSHIL NFQPGEAFVV RNIANMVPPF DQKRHSGVGA AVEYAVVHLK VENILVIGHS CCGGIKGLMS IEDDAAPTQS DFIENWVKIG
201: ASARNKIKEE HKDLSYDDQC NKCEKEAVNV SLGNLLSYPF VRAEVVKNTL AIRGGHYNFV KGTFDLWELD FKTTPAFAFS
Arabidopsis Description
BCA4Beta carbonic anhydrase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q94CE4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.