Factsheet for PGSC0003DMT400079571

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005490.2.1	Tomato	plastid	98.05	93.66
KRG99341	Soybean	nucleus	70.7	75.1
VIT_01s0127g00720.t01	Wine grape	cytosol	75.0	75.0
KRH45667	Soybean	nucleus	74.61	73.75
GSMUA_Achr7P26920_001	Banana	cytosol	55.08	70.15
GSMUA_Achr3P31010_001	Banana	cytosol	54.69	69.65
GSMUA_Achr1P13950_001	Banana	cytosol	54.3	69.15
KRH74596	Soybean	nucleus	75.0	69.06
KRH69565	Soybean	nucleus	74.22	68.35
Bra016223.1-P	Field mustard	cytosol	68.36	67.83
CDY69444	Canola	cytosol	67.97	67.44
Bra007912.1-P	Field mustard	cytosol	67.97	67.44
CDY64836	Canola	plastid	50.39	64.18
CDY25799	Canola	cytosol	64.84	64.09
Bra012384.1-P	Field mustard	cytosol	64.06	63.57
CDY28477	Canola	cytosol	64.06	63.32
AT1G23730.2	Thale cress	cytosol	63.28	62.79
CDY57847	Canola	plastid	68.36	62.5
PGSC0003DMT400017914	Potato	cytosol	34.77	62.24
AT1G70410.2	Thale cress	cytosol	67.97	62.14
CDY57304	Canola	cytosol	67.97	62.14
CDY03752	Canola	cytosol	67.97	62.14
CDX93638	Canola	cytosol	54.69	61.95
Bra018699.1-P	Field mustard	cytosol	54.3	61.5
Bra018698.1-P	Field mustard	cytosol	62.11	61.39
CDX93637	Canola	cytosol	53.52	61.16
CDY61543	Canola	cytosol	61.72	61.0
Bra024615.1-P	Field mustard	cytosol	61.33	60.62
KXG32976	Sorghum	cytosol	46.88	59.41
CDY47630	Canola	cytosol	54.3	59.15
CDY64834	Canola	cytosol	59.77	59.07
Zm00001d044095_P001	Maize	extracellular	45.7	58.5
GSMUA_Achr9P07050_001	Banana	plastid	57.42	56.32
PGSC0003DMT400001297	Potato	cytosol, extracellular, plastid	69.92	55.76
TraesCS7D01G443500.1	Wheat	cytosol	42.58	55.05
KXG32973	Sorghum	cytosol	43.75	54.9
TraesCS7D01G443400.1	Wheat	cytosol	42.97	54.46
TraesCS7B01G354800.1	Wheat	cytosol	42.58	53.96
GSMUA_Achr6P27350_001	Banana	plasma membrane, plastid	56.64	53.51
GSMUA_Achr4P14900_001	Banana	plastid	55.08	53.01
Zm00001d011454_P001	Maize	plastid	47.27	49.39
Zm00001d044096_P001	Maize	cytosol	44.92	48.12
TraesCS7A01G454500.1	Wheat	cytosol	39.06	46.95
TraesCS7B01G354900.1	Wheat	plastid	44.14	46.31
TraesCS7A01G454400.1	Wheat	plastid	42.97	46.03
TraesCS3A01G230100.1	Wheat	cytosol, plastid	44.92	46.0
TraesCS3B01G259400.1	Wheat	cytosol, plastid	44.14	45.2
TraesCS3D01G223200.1	Wheat	cytosol, plastid	44.14	45.2
TraesCS3D01G223300.1	Wheat	plastid	45.31	44.96
HORVU3Hr1G056990.2	Barley	cytosol, plastid	43.75	44.8
TraesCS3A01G230000.2	Wheat	plastid	45.31	44.79
TraesCS7A01G454300.1	Wheat	extracellular, plastid	42.97	44.72
TraesCS3B01G259300.1	Wheat	golgi, plastid	44.92	44.57
HORVU3Hr1G057090.2	Barley	plastid	45.31	44.27
KXG32978	Sorghum	cytosol, extracellular, plastid	43.75	43.75
Os01t0639900-01	Rice	extracellular, nucleus	44.14	41.54
PGSC0003DMT400022752	Potato	plastid	46.88	40.82
Os01t0640000-00	Rice	plastid	35.94	38.82
HORVU7Hr1G103870.12	Barley	cytosol, plastid	43.75	30.52
Zm00001d044099_P002	Maize	plastid	46.48	26.33
KXG32970	Sorghum	cytosol	45.31	25.89

Protein Annotations

KEGG:00910+4.2.1.1	Gene3D:3.40.1050.10	MapMan:35.1	EMBL:AB682673	ProteinID:BAM15482	ProteinID:BAM15482.1
InterPro:Carbonic_anhydrase	InterPro:Carbonic_anhydrase_CS	InterPro:Carbonic_anhydrase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004089	GO:GO:0005488	GO:GO:0008150	GO:GO:0008270	GO:GO:0015976	GO:GO:0016829
InterPro:IPR036874	UniProt:M1D227	PFAM:PF00484	EnsemblPlantsGene:PGSC0003DMG400030984	PGSC:PGSC0003DMG400030984	EnsemblPlants:PGSC0003DMT400079571
ScanProsite:PS00704	ScanProsite:PS00705	PANTHER:PTHR11002	PANTHER:PTHR11002:SF38	SMART:SM00947	SUPFAM:SSF53056
UniParc:UPI000295E8F1	SEG:seg	:	:	:	:

Description

Carbonic anhydrase [Source:PGSC_GENE;Acc:PGSC0003DMG400030984]

Coordinates

chr5:+:8377372..8382917

Molecular Weight (calculated)

28161.5 Da

IEP (calculated)

5.425

GRAVY (calculated)

-0.280

Length

256 amino acids

Sequence
(BLAST)

001: MAEDSYEDAI AGLKKLLSEK NELEDTAAAK IRQLTAELDG ADGKKSDPDE KIRSGFAHFK AEKYEKNPEL YGQLAKGQSP KFLVFACSDS RVCPSHILNF
101: QPGEAFVVRN IANMVPPYDQ TKYSGVGAAV EYAVVHLKVE NILVIGHSCC GGIKGLMSIP DDGSTKSDFI EEWVKICSTA KAKVKAEFCD LDHNEQCTKL
201: EKEAVNVSLG NLLTYPFVRE AVVKKSIALK GGHYDFENGS FELWNIDFKL TPSVSL

Best Arabidopsis Sequence Match ( AT1G70410.3 )
(BLAST)

001: MATESYEAAI KGLNDLLSTK ADLGNVAAAK IKALTAELKE LDSSNSDAIE RIKTGFTQFK TEKYLKNSTL FNHLAKTQTP KFLVFACSDS RVCPSHILNF
101: QPGEAFVVRN IANMVPPFDQ KRHSGVGAAV EYAVVHLKVE NILVIGHSCC GGIKGLMSIE DDAAPTQSDF IENWVKIGAS ARNKIKEEHK DLSYDDQCNK
201: CEKEAVNVSL GNLLSYPFVR AEVVKNTLAI RGGHYNFVKG TFDLWELDFK TTPAFAFS

Arabidopsis Description

BCA4Beta carbonic anhydrase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q94CE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.