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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 6
  • vacuole 8
  • plasma membrane 6
  • golgi 5
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400007661 Potato vacuole 95.23 94.72
Solyc10g079610.1.1 Tomato vacuole 67.9 68.82
Solyc07g055740.1.1 Tomato vacuole 59.68 64.1
KRH66809 Soybean endoplasmic reticulum 60.21 61.19
KRG95135 Soybean endoplasmic reticulum 59.95 60.92
Solyc07g055750.2.1 Tomato golgi, plastid, vacuole 63.93 59.8
Solyc06g073910.2.1 Tomato cytosol, plasma membrane, vacuole 37.14 46.05
Solyc11g071800.1.1 Tomato plastid, vacuole 45.62 43.99
Solyc03g114560.2.1 Tomato extracellular 36.07 41.59
Solyc03g114550.1.1 Tomato vacuole 29.97 41.24
Solyc03g114540.1.1 Tomato vacuole 35.01 39.29
Solyc03g114530.2.1 Tomato vacuole 33.95 38.55
Solyc12g039070.1.1 Tomato nucleus 32.89 37.24
Solyc03g053130.2.1 Tomato extracellular 39.79 36.23
Solyc02g082900.2.1 Tomato vacuole 25.2 25.61
Solyc05g025810.2.1 Tomato plasma membrane, vacuole 23.61 25.14
Protein Annotations
Gene3D:2.120.10.30MapMan:50.4.3InterPro:6-blade_b-propeller_TolB-likeGO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0016020GO:GO:0016787GO:GO:0016788GO:GO:0016844InterPro:IPR011042
UniProt:K4BRE7PFAM:PF03088PANTHER:PTHR10426PANTHER:PTHR10426:SF22SUPFAM:SSF63829SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc04g040090.2EnsemblPlants:Solyc04g040090.2.1InterPro:Strictosidine_synth_cons-regInterPro:Strictosidine_synthaseUniParc:UPI00027661FF:
Description
No Description!
Coordinates
chr4:-:12116626..12121677
Molecular Weight (calculated)
41662.8 Da
IEP (calculated)
6.289
GRAVY (calculated)
-0.112
Length
377 amino acids
Sequence
(BLAST)
001: MKALKFLMFS AITLALVSLI IASDSNSENN VFEPISISGS QDVLSKAEMI PLKLDAFGAE SVVFDPNGEG PYTGVADGRI IKWLQHNQTW VDFAVTSSQR
101: ENCTRASAPE MEHVCGRPLG LRFDHQTGDL YIADAYLGLQ VVGPNGGLAT PLVQHFEDQP LLFTNDLDID DHDHVIYFTD SSTIYQRRQF VNATASGDKT
201: GRLMKYDKST KQVTILLQGL SFANGVALSK DRTFVLVSET SACRITRYWL KGPNVGTHDT FAQLPGFPDN VRMNSRGEFW VALHAKASPL ARLITSNSWL
301: GKALLRKFNF QQMHNLLVGG KPHATAIKLS EDGGILEVLE DVEGKKLRFI SEVHEEENGK LWIGSVLMSS LGVYQLL
Best Arabidopsis Sequence Match ( AT3G57030.1 )
(BLAST)
001: MTMMIITVFL TVIAAVLAIL VKNSQTGSGI FAPPEISGSR DVFPSAKVVN LTGASGPESI AFDPAGEGPY VGVSDGRILK WRGEPLGWSD FAHTSSNRQE
101: CARPFAPELE HVCGRPLGLR FDKKTGDLYI ADAYFGLLVV GPAGGLAKPL VTEAEGQPFR FTNDLDIDEQ EDVIYFTDTS ARFQRRQFLA AVLNVDKTGR
201: FIKYDRSSKK ATVLLQGLAF ANGVALSKDR SFVLVVETTT CKILRLWLSG PNAGTHQVFA ELPGFPDNIR RNSNGEFWVA LHSKKGLFAK LSLTQTWFRD
301: LVLRLPISPQ RLHSLFTGGI PHATAIKLSE SGKVLEVLED KEGKTLRFIS EVEEKDGKLW IGSVLVPFLG VYDL
Arabidopsis Description
SSL10Protein STRICTOSIDINE SYNTHASE-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q4V3D9]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.