Factsheet for Solyc02g082900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 1
extracellular 5
endoplasmic reticulum 4
vacuole 7
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51450.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT3G51450.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT3G51450.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT3G51450.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003995	Potato	golgi, vacuole	92.99	92.25
VIT_04s0210g00060.t01	Wine grape	cytosol, mitochondrion	45.82	63.2
VIT_04s0210g00100.t01	Wine grape	cytosol	28.3	60.0
VIT_04s0210g00120.t01	Wine grape	vacuole	58.22	56.99
VIT_04s0210g00080.t01	Wine grape	vacuole	57.95	56.73
AT3G51440.1	Thale cress	golgi, vacuole	52.56	52.56
VIT_04s0210g00050.t01	Wine grape	plastid	58.76	52.28
CDX73720	Canola	golgi, vacuole	52.29	52.15
VIT_04s0210g00130.t01	Wine grape	plasma membrane, vacuole	40.16	52.1
CDY16307	Canola	golgi, vacuole	51.75	51.89
AT3G51450.1	Thale cress	vacuole	51.75	51.75
AT3G51420.1	Thale cress	golgi, vacuole	51.48	51.62
VIT_04s0210g00090.t01	Wine grape	mitochondrion, vacuole	27.22	51.53
AT3G51430.1	Thale cress	golgi, vacuole	51.48	51.48
Bra038899.1-P	Field mustard	golgi, vacuole	51.21	51.21
CDY33279	Canola	golgi, vacuole	51.21	51.21
CDY33280	Canola	golgi, vacuole	50.94	51.08
KRH69688	Soybean	golgi, vacuole	50.4	50.95
CDY16306	Canola	golgi, vacuole	48.25	50.14
Os10t0543500-01	Rice	plasma membrane	33.69	49.02
KRH07935	Soybean	endoplasmic reticulum	49.33	48.41
Bra038898.1-P	Field mustard	golgi, vacuole	51.21	47.86
TraesCS1A01G203800.1	Wheat	cytosol, plastid, vacuole	31.0	47.13
HORVU1Hr1G052450.8	Barley	extracellular, golgi, vacuole	45.28	45.65
CDX78005	Canola	vacuole	50.67	45.41
KRH69689	Soybean	plastid	48.25	45.2
Bra036798.1-P	Field mustard	vacuole	50.4	45.17
TraesCS1D01G207200.2	Wheat	extracellular, golgi, vacuole	44.2	44.69
TraesCS1B01G217600.1	Wheat	extracellular, golgi, vacuole	43.94	44.41
GSMUA_AchrUn_...	Banana	plastid	28.3	42.0
OQU92210	Sorghum	golgi, plastid, vacuole	47.17	39.5
VIT_04s0210g00040.t01	Wine grape	cytosol, peroxisome, vacuole	38.01	37.6
Solyc05g025810.2.1	Tomato	plasma membrane, vacuole	32.61	34.18
Solyc07g055740.1.1	Tomato	vacuole	27.22	28.77
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	23.45	28.62
VIT_04s0210g00030.t01	Wine grape	vacuole	56.87	27.3
Solyc10g079610.1.1	Tomato	vacuole	26.68	26.61
Solyc11g071800.1.1	Tomato	plastid, vacuole	27.22	25.83
Solyc03g053130.2.1	Tomato	extracellular	28.57	25.6
Solyc04g040090.2.1	Tomato	vacuole	25.61	25.2
Solyc03g114550.1.1	Tomato	vacuole	18.33	24.82
Solyc07g055750.2.1	Tomato	golgi, plastid, vacuole	25.88	23.82
Solyc03g114540.1.1	Tomato	vacuole	21.02	23.21
Solyc12g039070.1.1	Tomato	nucleus	20.75	23.12
Solyc03g114560.2.1	Tomato	extracellular	19.68	22.32
Solyc03g114530.2.1	Tomato	vacuole	19.95	22.29

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016788	GO:GO:0016844
InterPro:IPR011042	UniProt:K4BAG0	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF58	SUPFAM:SSF63829
EnsemblPlantsGene:Solyc02g082900.2	EnsemblPlants:Solyc02g082900.2.1	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI00027682C9

Description

No Description!

Coordinates

chr2:-:46531678..46534690

Molecular Weight (calculated)

41290.3 Da

IEP (calculated)

5.006

GRAVY (calculated)

-0.151

Length

371 amino acids

Sequence
(BLAST)

001: MTSPSIFLNP IFISLIIPVI LGTVFYQLDS FDPVSYPTHV LSTDPPIVAP KRNNQVLRGS ENIGVNQLLA PEDVAYDPES GVIYTACVDG WVKKVKVNES
101: AADSTVEDWV FTGGRPLGLA LGHHGEVIVA DSEKGLLLNV TSEGEIKVLT EEAEGLKLKL ADAVDVAEDG IIYFSDASYK YNIEQYIYDF LEGRPHGRLL
201: SYDPSTKQTK TLLSNLHFAN GVAVSPDQNY VIFCETPLRK CKKYHIKGEK KGSVDMFVDN LPGFPDNIRY DGEGHYWIAF ASENTYSWDL TLKYPFIRKI
301: MAIMVKYVGQ PKTEKNGGVL SVDLQGNPLE HYYDEDLTMV SSGIKIGDHL YCGSVKSPYI LRLNLKQYPA V

Best Arabidopsis Sequence Match ( AT3G51440.1 )
(BLAST)

001: MPVFLSSRFL FFCIIVPLLI SITLYQLDTF DPAHHPADSL ISSTASIPPL INERFLTGAE FIGVGLLNSP EDIAYHEDSG FIYTGCVDGW VKRVKVAESV
101: NDSLVEDLVN TGGRPLGIAF GIHGEVIVAD AYKGLLNISG DGKKTELLTE EADGVRFKLP DAVTVADNGV LYFTDGSYKY NLHQFSFDIL EGKPHGRLMS
201: FDPTTKVTRV LLRDLYFANG VSLSPDQTHL VFCETPIRRC SKYYINGGRV ELFIQGLPGY PDNIRYDGDG HYWIAMPSGV TTLWKLSMKY PFLRKITAMA
301: AKYGYEPMFM ENAGVLQVDL DGNPIAYYHD QALSHITTGV KIGNYLYCGS LWHSHILRLD LLKYPAQNKK L

Arabidopsis Description

SSL6Protein STRICTOSIDINE SYNTHASE-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD05]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.