Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
- vacuole 4
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_09s0002g03770.t01 | |
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51450.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT3G51450.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT3G51450.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 99.21 | 99.21 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 68.07 | 95.91 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 48.02 | 92.86 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 41.42 | 89.71 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 62.27 | 82.52 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 72.56 | 65.95 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 57.26 | 58.02 |
| Solyc02g082900.2.1 | Tomato | vacuole | 56.73 | 57.95 |
| Os10t0543500-01 | Rice | plasma membrane | 38.26 | 56.86 |
| TraesCS1A01G203800.1 | Wheat | cytosol, plastid, vacuole | 35.09 | 54.51 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 52.51 | 53.64 |
| CDX73720 | Canola | golgi, vacuole | 51.19 | 52.15 |
| KRH69688 | Soybean | golgi, vacuole | 50.4 | 52.04 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 50.92 | 52.02 |
| CDY33280 | Canola | golgi, vacuole | 50.13 | 51.35 |
| CDY16307 | Canola | golgi, vacuole | 50.13 | 51.35 |
| AT3G51450.1 | Thale cress | vacuole | 50.13 | 51.21 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 49.34 | 50.95 |
| GSMUA_AchrUn_... | Banana | plastid | 33.51 | 50.8 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 49.08 | 50.68 |
| KRH07935 | Soybean | endoplasmic reticulum | 50.4 | 50.53 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 49.6 | 50.13 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 48.81 | 50.0 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 48.28 | 49.73 |
| CDY33279 | Canola | golgi, vacuole | 48.02 | 49.06 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 48.02 | 49.06 |
| CDY16306 | Canola | golgi, vacuole | 45.38 | 48.18 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 49.6 | 47.36 |
| KRH69689 | Soybean | plastid | 49.34 | 47.22 |
| Bra036798.1-P | Field mustard | vacuole | 49.34 | 45.17 |
| CDX78005 | Canola | vacuole | 48.81 | 44.69 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 51.98 | 44.47 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 71.24 | 34.93 |
| VIT_11s0016g00860.t01 | Wine grape | golgi, vacuole | 32.98 | 34.25 |
| VIT_11s0016g00880.t01 | Wine grape | plastid | 31.66 | 32.61 |
| VIT_13s0074g00070.t01 | Wine grape | vacuole | 20.84 | 28.83 |
| VIT_06s0009g00850.t01 | Wine grape | cytosol | 26.12 | 28.21 |
| VIT_10s0042g00010.t01 | Wine grape | vacuole | 22.96 | 27.62 |
| VIT_10s0042g00030.t01 | Wine grape | vacuole | 19.79 | 27.47 |
| VIT_10s0071g00020.t01 | Wine grape | vacuole | 21.9 | 26.86 |
| VIT_00s0575g00020.t01 | Wine grape | vacuole | 22.69 | 26.71 |
| VIT_13s0074g00080.t01 | Wine grape | vacuole | 22.69 | 26.71 |
| VIT_10s0042g00020.t01 | Wine grape | vacuole | 22.69 | 26.71 |
| VIT_10s0042g00050.t01 | Wine grape | vacuole | 22.69 | 26.71 |
| VIT_00s0575g00010.t01 | Wine grape | vacuole | 21.9 | 26.6 |
| VIT_11s0016g00870.t01 | Wine grape | plasma membrane, vacuole | 32.19 | 26.46 |
| VIT_10s0071g00010.t01 | Wine grape | vacuole | 22.16 | 26.09 |
| VIT_08s0007g05370.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 25.33 | 25.95 |
| VIT_10s0071g00250.t01 | Wine grape | vacuole | 22.16 | 24.71 |
| VIT_17s0000g04600.t01 | Wine grape | vacuole | 22.16 | 24.49 |
| VIT_08s0007g05360.t01 | Wine grape | vacuole | 24.27 | 24.34 |
| VIT_17s0000g04580.t01 | Wine grape | extracellular, vacuole | 11.61 | 24.31 |
| VIT_17s0000g04610.t01 | Wine grape | vacuole | 20.84 | 21.53 |
| VIT_05s0102g00880.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi | 22.69 | 21.18 |
| VIT_17s0000g04590.t01 | Wine grape | endoplasmic reticulum, peroxisome, vacuole | 20.58 | 17.22 |
Protein Annotations
| EntrezGene:100244596 | wikigene:100244596 | Gene3D:2.120.10.30 | MapMan:50.4.3 | InterPro:6-blade_b-propeller_TolB-like | ProteinID:CCB61039 |
| ProteinID:CCB61039.1 | UniProt:F6I272 | EMBL:FN596531 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016788 | GO:GO:0016844 | InterPro:IPR011042 |
| EntrezGene:LOC100244596 | wikigene:LOC100244596 | PFAM:PF03088 | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | SUPFAM:SSF63829 |
| SignalP:SignalP-TM | InterPro:Strictosidine_synth_cons-reg | InterPro:Strictosidine_synthase | TMHMM:TMhelix | UniParc:UPI00015CD9FC | ArrayExpress:VIT_04s0210g00080 |
| EnsemblPlantsGene:VIT_04s0210g00080 | EnsemblPlants:VIT_04s0210g00080.t01 | RefSeq:XP_002274023.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4:+:20471195..20473374
Molecular Weight (calculated)
42084.9 Da
IEP (calculated)
6.290
GRAVY (calculated)
-0.149
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSTPSQSS MARRSSSWPL GLLTLILAPV AAAMLLYQLD PYDPAPVPIH EFSQQPMVVP KLNPRMLQGS EMIGVGKLLS PEDIAYHPDS HLIYTGCDDG
101: WVKRITLNDS MVQNWAFTGG RPLGVALGRH GQLVVADAEK GLLEVTADGM VKTLTDEAEG LKFKLTDGVD VAVDGMIYFT DASYKYGLKE HIQDILEGRP
201: HGRLMSFDPS TKETKVLVRD LFFANGVVVS PDQNSVIVCE SVMRRCLKYH IQGERKGSVD KFIDNLPGPP DNILYDGEEH YWIALPMGNS LAWDLALKYP
301: WIRKVVAIME RYKVRPHIEK NGGVLAVDLE GKPTAYYYDP SLSEVTSGVK IGNYLYCGSI TKPYMIRLDL HQHAARATM
101: WVKRITLNDS MVQNWAFTGG RPLGVALGRH GQLVVADAEK GLLEVTADGM VKTLTDEAEG LKFKLTDGVD VAVDGMIYFT DASYKYGLKE HIQDILEGRP
201: HGRLMSFDPS TKETKVLVRD LFFANGVVVS PDQNSVIVCE SVMRRCLKYH IQGERKGSVD KFIDNLPGPP DNILYDGEEH YWIALPMGNS LAWDLALKYP
301: WIRKVVAIME RYKVRPHIEK NGGVLAVDLE GKPTAYYYDP SLSEVTSGVK IGNYLYCGSI TKPYMIRLDL HQHAARATM
001: MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L
Arabidopsis Description
SSL5Protein STRICTOSIDINE SYNTHASE-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAZ7]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.