Subcellular Localization
min:
: max
Winner_takes_all: plastid, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- vacuole 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0543500-01 | Rice | plasma membrane | 75.0 | 71.76 |
| TraesCS1B01G217600.1 | Wheat | extracellular, golgi, vacuole | 95.9 | 63.76 |
| TraesCS1D01G207200.2 | Wheat | extracellular, golgi, vacuole | 95.49 | 63.49 |
| HORVU1Hr1G052450.8 | Barley | extracellular, golgi, vacuole | 90.98 | 60.33 |
| VIT_04s0210g00060.t01 | Wine grape | cytosol, mitochondrion | 54.51 | 49.44 |
| VIT_04s0210g00100.t01 | Wine grape | cytosol | 34.02 | 47.43 |
| OQU92210 | Sorghum | golgi, plastid, vacuole | 75.82 | 41.76 |
| VIT_04s0210g00120.t01 | Wine grape | vacuole | 54.92 | 35.36 |
| VIT_04s0210g00080.t01 | Wine grape | vacuole | 54.51 | 35.09 |
| CDX73720 | Canola | golgi, vacuole | 50.41 | 33.06 |
| AT3G51450.1 | Thale cress | vacuole | 50.0 | 32.88 |
| CDY16307 | Canola | golgi, vacuole | 49.59 | 32.7 |
| CDY33280 | Canola | golgi, vacuole | 49.59 | 32.7 |
| AT3G51430.1 | Thale cress | golgi, vacuole | 49.59 | 32.61 |
| TraesCS7A01G138700.1 | Wheat | cytosol | 27.87 | 32.54 |
| TraesCS7A01G138300.1 | Wheat | cytosol | 27.87 | 32.54 |
| Bra038899.1-P | Field mustard | golgi, vacuole | 49.18 | 32.34 |
| CDY33279 | Canola | golgi, vacuole | 48.77 | 32.08 |
| AT3G51440.1 | Thale cress | golgi, vacuole | 48.77 | 32.08 |
| AT3G51420.1 | Thale cress | golgi, vacuole | 47.95 | 31.62 |
| PGSC0003DMT400003995 | Potato | golgi, vacuole | 47.54 | 31.02 |
| Solyc02g082900.2.1 | Tomato | vacuole | 47.13 | 31.0 |
| CDY16306 | Canola | golgi, vacuole | 45.08 | 30.81 |
| KRH69688 | Soybean | golgi, vacuole | 45.49 | 30.25 |
| KRH07935 | Soybean | endoplasmic reticulum | 46.72 | 30.16 |
| VIT_04s0210g00050.t01 | Wine grape | plastid | 50.41 | 29.5 |
| TraesCS1A01G437900.1 | Wheat | cytosol | 22.13 | 29.03 |
| Bra038898.1-P | Field mustard | golgi, vacuole | 47.13 | 28.97 |
| GSMUA_AchrUn_... | Banana | plastid | 29.51 | 28.8 |
| VIT_04s0210g00130.t01 | Wine grape | plasma membrane, vacuole | 33.61 | 28.67 |
| KRH69689 | Soybean | plastid | 45.49 | 28.03 |
| TraesCS2A01G170300.1 | Wheat | cytosol | 35.25 | 26.88 |
| Bra036798.1-P | Field mustard | vacuole | 45.49 | 26.81 |
| CDX78005 | Canola | vacuole | 45.08 | 26.57 |
| TraesCS3A01G298200.1 | Wheat | cytosol | 29.1 | 22.4 |
| TraesCS5A01G390200.1 | Wheat | golgi | 33.61 | 20.6 |
| TraesCS2A01G170200.1 | Wheat | plasma membrane, vacuole | 33.2 | 20.45 |
| TraesCS3A01G256600.1 | Wheat | vacuole | 27.46 | 19.94 |
| TraesCS2A01G078000.1 | Wheat | vacuole | 27.87 | 19.83 |
| TraesCS5A01G188200.1 | Wheat | vacuole | 28.69 | 19.28 |
| TraesCS3A01G496700.1 | Wheat | golgi, vacuole | 27.05 | 19.13 |
| TraesCS1A01G026500.1 | Wheat | vacuole | 27.05 | 19.13 |
| TraesCS2A01G260200.1 | Wheat | mitochondrion, vacuole | 27.05 | 19.08 |
| TraesCS3A01G496900.1 | Wheat | vacuole | 27.05 | 18.86 |
| VIT_04s0210g00090.t01 | Wine grape | mitochondrion, vacuole | 14.75 | 18.37 |
| VIT_04s0210g00040.t01 | Wine grape | cytosol, peroxisome, vacuole | 27.87 | 18.13 |
| TraesCS5A01G188300.1 | Wheat | extracellular, plasma membrane, vacuole | 27.46 | 17.77 |
| TraesCS7A01G138800.1 | Wheat | golgi, vacuole | 21.72 | 17.38 |
| TraesCS4A01G089000.1 | Wheat | endoplasmic reticulum, golgi, mitochondrion, vacuole | 28.28 | 16.71 |
| VIT_04s0210g00030.t01 | Wine grape | vacuole | 48.77 | 15.39 |
| TraesCS5A01G131200.1 | Wheat | vacuole | 15.57 | 15.02 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G203800.1 | EnsemblPlantsGene:TraesCS1A01G203800 | Gene3D:2.120.10.30 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016844 | InterPro:6-blade_b-propeller_TolB-like | InterPro:IPR011042 | InterPro:Strictosidine_synth_cons-reg |
| InterPro:Strictosidine_synthase | PANTHER:PTHR10426 | PANTHER:PTHR10426:SF58 | PFAM:PF03088 | SEG:seg | SUPFAM:SSF63829 |
| MapMan:50.4.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:365536062..365536994
Molecular Weight (calculated)
27010.4 Da
IEP (calculated)
6.944
GRAVY (calculated)
-0.045
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MANWQGLLKV RPDKTVELLT DAAEGLKFAL TDGVDIAADG TIYFTDASYK YSLAHHFLDV LEARPHGRLM SFDPSTRRTS VLARDLYFAN GVAVAPDQDS
101: LIFCETVMRR CSRYHIRGNK AGTVESFIDS LPGLPDNIRY DGEQGRYWIA LSAGRTLQLD VLMWSPLVRK LVYMVEKYVM AVPQGLRDSG TMSVALNGEP
201: VTMYTDPGLA LATGWLKVGG YLYYGSLASS YISRVDLTKS SIQA
101: LIFCETVMRR CSRYHIRGNK AGTVESFIDS LPGLPDNIRY DGEQGRYWIA LSAGRTLQLD VLMWSPLVRK LVYMVEKYVM AVPQGLRDSG TMSVALNGEP
201: VTMYTDPGLA LATGWLKVGG YLYYGSLASS YISRVDLTKS SIQA
001: MPVLFSSRSL ILSIIVPLLI SIALYKLDTF DPAIVPSDAF TSSATSLPPL INDEFLTGAE FIGVGLLNIP EDIAYHKESN LIYTGCVDGW VKRVKVADSV
101: NDSVVEDWVN TGGRPLGIAF GIHGEVIVAD VHKGLLNISG DGKKTELLTD EADGVKFKLT DAVTVADNGV LYFTDASYKY TLNQLSLDML EGKPFGRLLS
201: FDPTTRVTKV LLKDLYFANG ITISPDQTHL IFCETPMKRC SKYYISEERV EVFTQSLPGY PDNIRYDGDG HYWIALPSGV TTLWNISLKY PFLRKLTAMV
301: AKYGVDLMFM ENAGVLQVDL DGNPIAYYHD PKLSHIATCD KIGKYLYCGS LSQSHILRLD LLKYPAQNKK L
101: NDSVVEDWVN TGGRPLGIAF GIHGEVIVAD VHKGLLNISG DGKKTELLTD EADGVKFKLT DAVTVADNGV LYFTDASYKY TLNQLSLDML EGKPFGRLLS
201: FDPTTRVTKV LLKDLYFANG ITISPDQTHL IFCETPMKRC SKYYISEERV EVFTQSLPGY PDNIRYDGDG HYWIALPSGV TTLWNISLKY PFLRKLTAMV
301: AKYGVDLMFM ENAGVLQVDL DGNPIAYYHD PKLSHIATCD KIGKYLYCGS LSQSHILRLD LLKYPAQNKK L
Arabidopsis Description
SSL7Protein STRICTOSIDINE SYNTHASE-LIKE 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD04]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.