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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 4
  • mitochondrion 1
  • vacuole 3
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:vacuole
Plant-mPloc:vacuole
PProwler:secretory
TargetP:plastid
WoLF PSORT:plastid
YLoc:plasma membrane
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG97393
KRH09922
KRH11076
KRH21197
KRH23409
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G51450.1 KRG97393 AT1G27300.1 21798944
AT3G51450.1 KRH31520 AT1G27300.1 21798944
AT3G51450.1 KRH76090 AT1G27300.1 21798944
AT3G51450.1 KRH09922 AT3G16310.1 21798944
AT3G51450.1 KRH23409 AT3G16310.1 21798944
AT3G51450.1 KRH11076 AT4G19030.1 21798944
AT3G51450.1 KRH21197 AT4G19030.1 21798944
AT3G51450.1 KRH42923 AT4G19030.1 21798944
AT3G51450.1 KRH42926 AT4G19030.1 21798944
AT3G51450.1 KRH45251 AT4G19030.1 21798944
AT3G51450.1 KRH59035 AT4G19030.1 21798944
AT3G51450.1 KRH59036 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH69688 Soybean golgi, vacuole 87.57 90.19
KRH69689 Soybean plastid 58.73 56.06
VIT_04s0210g00060.t01 Wine grape cytosol, mitochondrion 37.83 53.16
VIT_04s0210g00120.t01 Wine grape vacuole 50.79 50.66
VIT_04s0210g00080.t01 Wine grape vacuole 50.53 50.4
VIT_04s0210g00100.t01 Wine grape cytosol 23.28 50.29
Os10t0543500-01 Rice plasma membrane 33.6 49.8
PGSC0003DMT400003995 Potato golgi, vacuole 49.21 49.73
VIT_04s0210g00090.t01 Wine grape mitochondrion, vacuole 25.66 49.49
Solyc02g082900.2.1 Tomato vacuole 48.41 49.33
AT3G51430.1 Thale cress golgi, vacuole 47.09 47.98
CDY16307 Canola golgi, vacuole 46.83 47.84
AT3G51420.1 Thale cress golgi, vacuole 46.56 47.57
CDY33280 Canola golgi, vacuole 46.56 47.57
VIT_04s0210g00130.t01 Wine grape plasma membrane, vacuole 35.98 47.55
AT3G51440.1 Thale cress golgi, vacuole 46.3 47.17
CDX73720 Canola golgi, vacuole 46.03 46.77
HORVU1Hr1G052450.8 Barley extracellular, golgi, vacuole 45.5 46.74
TraesCS1A01G203800.1 Wheat cytosol, plastid, vacuole 30.16 46.72
Bra038899.1-P Field mustard golgi, vacuole 45.77 46.63
CDY33279 Canola golgi, vacuole 45.77 46.63
CDY16306 Canola golgi, vacuole 43.92 46.5
TraesCS1D01G207200.2 Wheat extracellular, golgi, vacuole 44.97 46.32
AT3G51450.1 Thale cress vacuole 45.24 46.09
TraesCS1B01G217600.1 Wheat extracellular, golgi, vacuole 44.71 46.05
VIT_04s0210g00050.t01 Wine grape plastid 50.0 45.32
GSMUA_AchrUn_... Banana plastid 29.63 44.8
Bra038898.1-P Field mustard golgi, vacuole 44.97 42.82
CDX78005 Canola vacuole 46.03 42.03
Bra036798.1-P Field mustard vacuole 45.77 41.79
OQU92210 Sorghum golgi, plastid, vacuole 46.56 39.73
VIT_04s0210g00040.t01 Wine grape cytosol, peroxisome, vacuole 33.6 33.87
KRH37504 Soybean vacuole 28.31 29.89
KRH37503 Soybean vacuole 22.75 27.39
KRH54773 Soybean vacuole 23.28 26.11
KRH66809 Soybean endoplasmic reticulum 25.4 25.88
KRG95135 Soybean endoplasmic reticulum 25.4 25.88
VIT_04s0210g00030.t01 Wine grape vacuole 50.26 24.58
KRH22599 Soybean vacuole 24.87 24.42
KRH03206 Soybean vacuole 21.69 24.4
KRH26734 Soybean vacuole 23.02 23.84
KRH63133 Soybean peroxisome, vacuole 10.85 23.7
KRH56734 Soybean vacuole 21.43 23.68
KRH66810 Soybean vacuole 23.81 23.56
KRH56180 Soybean endoplasmic reticulum 27.25 23.36
KRH07462 Soybean vacuole 21.16 23.05
KRH45407 Soybean nucleus 21.16 22.92
KRH23218 Soybean golgi, vacuole 24.6 22.68
KRH10120 Soybean endoplasmic reticulum 24.6 22.68
Protein Annotations
EntrezGene:100778397Gene3D:2.120.10.30MapMan:50.4.3InterPro:6-blade_b-propeller_TolB-likeEMBL:ACUP02010123EnsemblPlantsGene:GLYMA_16G119000
GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016788GO:GO:0016844UniProt:I1MMY1InterPro:IPR011042EnsemblPlants:KRH07935
ProteinID:KRH07935ProteinID:KRH07935.1PFAM:PF03088PANTHER:PTHR10426PANTHER:PTHR10426:SF58SUPFAM:SSF63829
InterPro:Strictosidine_synth_cons-regInterPro:Strictosidine_synthaseTMHMM:TMhelixUniParc:UPI0001BA53B2SEG:seg:
Description
hypothetical protein
Coordinates
chr16:-:26523662..26527148
Molecular Weight (calculated)
41617.8 Da
IEP (calculated)
5.271
GRAVY (calculated)
-0.004
Length
378 amino acids
Sequence
(BLAST)
001: MSSSESTNAR TRTASWFSTP FFVIVLPVAV AALLYRLEPF KPVLLPVQLG RSTVAVPARN GHMQDGSERV GEGHLEGPED LAYDAAARVV YTGCEDGWIK
101: RVTVNDSVVD SAVEDWVNTG GRPLGLVLKP NGELIVADAE KGLLRVSSEK EIELLVDEFE GLKFKLTDGV DIADDGTIYF TDASHKYPVK DAVFDVLEGK
201: PNGRFFSYNP ATKKTTLLAQ DLYFANGVAV SADQQFVVFC ESVLMRCNKY FVLGPKTGTI EKFCDLPGMP DNIHYDGQGH YLIAMFTALS PELELAYRYP
301: FIRKAFAMFT KYVGSLSISK NGGVLVVDLE GKPTAHYYDP KLALTSAIKI GNHIYAGSIF YPFVTRFDVE KYPALPTV
Best Arabidopsis Sequence Match ( AT3G51430.1 )
(BLAST)
001: MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA
101: NDSVVEDWVN TGGRPLGIAF GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY TLHQVKFDIL EGKPHGRLMS
201: FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA
301: AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD LLKYPAQKKK L
Arabidopsis Description
SSL5Protein STRICTOSIDINE SYNTHASE-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAZ7]
SUBAcon: [golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.