CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
cytosol 1
vacuole 6
extracellular 3
endoplasmic reticulum 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g00850.t01	Wine grape	cytosol	59.86	75.21
KRH26734	Soybean	vacuole	61.22	73.97
PGSC0003DMT400007732	Potato	vacuole	63.49	71.61
PGSC0003DMT400015199	Potato	vacuole	62.81	70.84
Solyc11g071800.1.1	Tomato	plastid, vacuole	62.59	70.59
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	48.07	69.74
Bra018623.1-P	Field mustard	cytosol	54.42	68.38
HORVU5Hr1G114720.1	Barley	plastid	29.25	67.89
KRH22599	Soybean	vacuole	59.18	67.79
AT1G08470.1	Thale cress	endoplasmic reticulum, vacuole	58.5	66.15
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	58.28	66.07
CDX95058	Canola	vacuole	55.33	65.24
CDX93560	Canola	vacuole	58.05	65.14
EER90869	Sorghum	vacuole	57.82	64.07
GSMUA_Achr8P04740_001	Banana	endoplasmic reticulum, golgi, vacuole	59.86	63.61
TraesCS5D01G400000.1	Wheat	golgi	55.33	61.31
TraesCS5A01G390200.1	Wheat	golgi	55.1	61.06
TraesCS5B01G395100.1	Wheat	vacuole	55.1	60.9
HORVU5Hr1G095260.1	Barley	extracellular	54.88	60.65
Os03t0750700-01	Rice	plasma membrane	54.65	60.4
HORVU5Hr1G114800.1	Barley	extracellular	26.08	53.49
Zm00001d034032_P001	Maize	plasma membrane	58.05	47.5
KRG95135	Soybean	endoplasmic reticulum	39.23	46.63
KRH66809	Soybean	endoplasmic reticulum	38.55	45.82
KRH10120	Soybean	endoplasmic reticulum	38.1	40.98
KRH23218	Soybean	golgi, vacuole	37.64	40.49
KRH45407	Soybean	nucleus	30.61	38.68
KRH07462	Soybean	vacuole	30.16	38.33
KRH66810	Soybean	vacuole	32.65	37.7
HORVU6Hr1G025030.1	Barley	cytosol	9.3	36.94
KRH03206	Soybean	vacuole	27.66	36.31
KRH56734	Soybean	vacuole	27.44	35.38
KRH54773	Soybean	vacuole	26.3	34.42
KRH63133	Soybean	peroxisome, vacuole	12.7	32.37
KRH37504	Soybean	vacuole	22.9	28.21
KRH69688	Soybean	golgi, vacuole	22.9	27.52
KRH07935	Soybean	endoplasmic reticulum	23.36	27.25
KRH69689	Soybean	plastid	22.45	25.0
KRH37503	Soybean	vacuole	17.46	24.52

Protein Annotations

EntrezGene:100803331	Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	EMBL:ACUP02004104	EnsemblPlantsGene:GLYMA_06G308800
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016788	GO:GO:0016844	UniProt:I1KFH2
InterPro:IPR011042	EnsemblPlants:KRH56180	ProteinID:KRH56180	ProteinID:KRH56180.1	PFAM:PF03088	PANTHER:PTHR10426
PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI000233A8DD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:49739505..49742763

Molecular Weight (calculated)

49556.7 Da

IEP (calculated)

7.928

GRAVY (calculated)

-0.087

Length

441 amino acids

Sequence
(BLAST)

001: MFNQTKPNSY PTFFIIINII VNFNDNHFLF SSHRTQQPSS FLFPVLLCAA MGRGLGVVLV LLAVYCGLDP FQHSPIAHFP DFEVKRVDMP AWSEVPTDQD
101: KHNLLQKSEI KFANQVQGPE SIAFDPLGRG PYTGLADGTI VFWNGHSWLH FAYTSPNRSE ICNPIASATP FSYVKNEHIC GRPLGLRFDK KTGDLYIADA
201: YFGLLKVGPE GGLATSLVTE AEGIPLRFTN DVDVDTEGNV YFTESSALYP RRNFLQLVFS GDDSGRVLKY NLATKETTVL VRNIQFPNGI SLSKDGSFFV
301: FCEGVVGRLR KYWLKGEKAG TSEILAILPG YPDNVRVNED GDFWVALHSR RYMYAYYNGI YPKMRKIILK LPIPIKIHYL LQIGGRQHAA VIRYSPEGKL
401: LQILEDSEGK VVKAVSEVEE KDGKLWMGSV LMPFVAVYNL K

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.