CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018623.1-P	Field mustard	cytosol	88.8	99.43
CDX95058	Canola	vacuole	92.62	97.33
AT1G08470.1	Thale cress	endoplasmic reticulum, vacuole	87.79	88.46
VIT_06s0009g00850.t01	Wine grape	cytosol	63.36	70.94
PGSC0003DMT400015199	Potato	vacuole	67.94	68.29
PGSC0003DMT400007732	Potato	vacuole	67.68	68.03
Solyc11g071800.1.1	Tomato	plastid, vacuole	67.43	67.77
Solyc06g073910.2.1	Tomato	cytosol, plasma membrane, vacuole	51.15	66.12
GSMUA_Achr3P30810_001	Banana	endoplasmic reticulum, vacuole	64.89	65.55
CDX92388	Canola	vacuole	59.29	63.66
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	63.61	63.29
KRH26734	Soybean	vacuole	58.78	63.29
HORVU5Hr1G114720.1	Barley	plastid	30.03	62.11
EER90869	Sorghum	vacuole	61.32	60.55
TraesCS5D01G400000.1	Wheat	golgi	59.8	59.05
TraesCS5B01G395100.1	Wheat	vacuole	59.8	58.9
TraesCS5A01G390200.1	Wheat	golgi	59.54	58.79
KRH22599	Soybean	vacuole	57.25	58.44
HORVU5Hr1G095260.1	Barley	extracellular	59.29	58.4
GSMUA_Achr8P04740_001	Banana	endoplasmic reticulum, golgi, vacuole	61.32	58.07
KRH56180	Soybean	endoplasmic reticulum	65.14	58.05
Os03t0750700-01	Rice	plasma membrane	58.27	57.39
HORVU5Hr1G114800.1	Barley	extracellular	29.52	53.95
CDX72079	Canola	vacuole	40.97	48.79
CDY70367	Canola	cytosol	32.06	45.99
CDY06143	Canola	vacuole	44.27	45.31
Zm00001d034032_P001	Maize	plasma membrane	61.32	44.71
CDX89027	Canola	endoplasmic reticulum, vacuole	42.75	41.58
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	39.69	41.49
CDY22517	Canola	vacuole	38.93	41.46
HORVU6Hr1G025030.1	Barley	cytosol	11.7	41.44
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	42.49	41.44
CDX76033	Canola	vacuole	39.44	41.22
CDY30962	Canola	vacuole	39.44	41.22
CDY30963	Canola	vacuole	39.44	41.22
CDX71901	Canola	extracellular, golgi, vacuole	42.24	41.19
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	38.42	40.92
CDX67673	Canola	vacuole	38.42	40.81
CDY54042	Canola	vacuole	38.42	40.81
CDY22515	Canola	vacuole	36.13	40.69
CDY23857	Canola	vacuole	38.17	40.65
CDX79943	Canola	vacuole	37.91	40.38
CDY06144	Canola	vacuole	37.4	39.84
CDY30959	Canola	extracellular, golgi, vacuole	37.4	39.73
CDY35420	Canola	vacuole	35.37	39.71
CDX77108	Canola	vacuole	37.15	39.46
CDY47397	Canola	vacuole	29.26	39.38
CDY30558	Canola	vacuole	37.15	39.14
CDY39351	Canola	extracellular, plasma membrane, vacuole	34.61	38.97
CDY23858	Canola	vacuole	36.39	38.24
CDX79944	Canola	vacuole	36.39	38.13
CDX96506	Canola	vacuole	29.26	35.38
CDX73037	Canola	vacuole	29.52	35.37
CDX96505	Canola	vacuole	29.52	35.37
CDY47728	Canola	vacuole	29.01	34.86
CDX73038	Canola	vacuole	28.75	34.77
CDY45861	Canola	vacuole	29.01	34.55
CDX73039	Canola	vacuole	28.5	34.36
CDY47729	Canola	vacuole	28.24	34.15
CDX96507	Canola	vacuole	28.24	34.05
CDY45863	Canola	vacuole	27.74	33.54
CDX68204	Canola	vacuole	26.72	32.01
CDY66189	Canola	vacuole	24.17	31.99
CDY66188	Canola	vacuole	26.46	31.71
CDY16307	Canola	golgi, vacuole	25.95	27.57
CDY33280	Canola	golgi, vacuole	25.7	27.3
CDY33279	Canola	golgi, vacuole	25.7	27.22
CDY16306	Canola	golgi, vacuole	24.68	27.17
CDX73720	Canola	golgi, vacuole	25.45	26.88
CDX78005	Canola	vacuole	24.43	23.19

Protein Annotations

EnsemblPlants:CDX93560	EnsemblPlantsGene:GSBRNA2T00156237001	Gene3D:2.120.10.30	GO:A0A078DW67	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042
InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	PFAM:PF03088	ProteinID:CDX93560
ProteinID:CDX93560.1	SignalP:SignalP-noTM	SUPFAM:SSF63829	UniParc:UPI0004EEB74C	MapMan:50.4.3	:

Description

BnaA06g04880D

Coordinates

chrLK031876:+:714315..716844

Molecular Weight (calculated)

44439.2 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.248

Length

393 amino acids

Sequence
(BLAST)

001: MATTVFSKLS KIFFLFAIYC ALDPFKHSSI SKYPDFQTHK IDMPPLASLP KERDHENLLQ NSEIRFVNEV QGPESIAFDP LGRGPYTGVA DGRILFWDGT
101: RWTDFAYTSN NRSELCDTKS SLLAYLKNEH ICGRPLGLRF HKRTGDLYIA DAYFGIMKVG PEGGLATSLT TEADGVPLRF TNDLDVDEEG NVYFTDSSSV
201: FQRRNFMHLI VSGEDTGRVL KYNPETKETT TLLRNLQFPN GLSLGRDGSF FIFCEGSIGR LRKYWLKGEK AGTSEVVALL HGFPDNIRTN KDGDFWVAVH
301: CHRNIFTHVM AHHPNVRKFF LKLPITVKFQ YLLQVGGWPH AVAVKYSEDG KVLKVLEDKQ GKVVKAVSEI EEKDGKLWMG SVLMSFIAVY DLP

Best Arabidopsis Sequence Match ( AT1G08470.1 )
(BLAST)

001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP

Arabidopsis Description

SSL3SSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178WK70]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.