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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:
  • cytosol 1
  • extracellular 4
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 4
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, vacuole
Any Predictor:cytosol, secretory
BaCelLo:cytosol
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX97739
CDY30157

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G57010.1 CDX97739 AT3G16310.1 21798944
AT3G57010.1 CDY30157 AT3G16310.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014655.1-P Field mustard endoplasmic reticulum, golgi 100.0 98.69
CDY30962 Canola vacuole 96.81 96.81
CDX76033 Canola vacuole 94.41 94.41
CDY30963 Canola vacuole 94.41 94.41
CDY47397 Canola vacuole 70.21 90.41
AT3G57010.1 Thale cress extracellular, golgi, vacuole 81.12 81.12
CDY70367 Canola cytosol 51.6 70.8
CDY22517 Canola vacuole 67.82 69.11
CDY30959 Canola extracellular, golgi, vacuole 67.02 68.11
CDX77108 Canola vacuole 67.02 68.11
CDY30558 Canola vacuole 67.29 67.83
CDY23857 Canola vacuole 66.49 67.75
CDX79943 Canola vacuole 66.49 67.75
CDY39351 Canola extracellular, plasma membrane, vacuole 62.5 67.34
CDY54042 Canola vacuole 65.43 66.49
CDX67673 Canola vacuole 64.89 65.95
CDX72080 Canola endoplasmic reticulum, extracellular, golgi 64.1 65.31
CDY06144 Canola vacuole 64.1 65.31
CDX72079 Canola vacuole 40.69 46.36
KRG95135 Soybean endoplasmic reticulum 44.41 45.01
KRH66809 Soybean endoplasmic reticulum 44.15 44.74
CDY06143 Canola vacuole 43.88 42.97
CDX95058 Canola vacuole 39.89 40.11
CDX93560 Canola vacuole 41.49 39.69
CDX92388 Canola vacuole 37.77 38.8
CDY16615 Canola endoplasmic reticulum, extracellular, vacuole 40.43 38.48
CDY22515 Canola vacuole 32.71 35.24
CDX73037 Canola vacuole 30.59 35.06
CDX79944 Canola vacuole 34.84 34.93
CDX96505 Canola vacuole 30.05 34.45
CDY35420 Canola vacuole 31.91 34.29
CDY23858 Canola vacuole 34.04 34.22
CDY45861 Canola vacuole 29.79 33.94
CDY47728 Canola vacuole 29.26 33.64
CDX96506 Canola vacuole 28.19 32.62
CDX73038 Canola vacuole 27.93 32.31
CDY47729 Canola vacuole 27.66 32.0
CDY45863 Canola vacuole 27.39 31.69
CDX89027 Canola endoplasmic reticulum, vacuole 34.04 31.68
CDX73039 Canola vacuole 27.39 31.6
CDX96507 Canola vacuole 27.39 31.6
CDY05993 Canola endoplasmic reticulum, golgi, vacuole 33.78 31.51
CDX68204 Canola vacuole 27.39 31.4
CDY66189 Canola vacuole 24.73 31.31
CDX71901 Canola extracellular, golgi, vacuole 33.51 31.27
CDY66188 Canola vacuole 27.13 31.1
CDY33280 Canola golgi, vacuole 20.21 20.54
CDY16307 Canola golgi, vacuole 20.21 20.54
CDY33279 Canola golgi, vacuole 19.68 19.95
CDX73720 Canola golgi, vacuole 19.68 19.89
CDY16306 Canola golgi, vacuole 18.62 19.61
CDX78005 Canola vacuole 19.68 17.87
Protein Annotations
EnsemblPlants:CDX76030EnsemblPlantsGene:GSBRNA2T00126256001Gene3D:2.120.10.30GO:A0A078CGU2GO:GO:0003674GO:GO:0003824
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0016844InterPro:6-blade_b-propeller_TolB-likeInterPro:IPR011042
InterPro:Strictosidine_synth_cons-regInterPro:Strictosidine_synthasePANTHER:PTHR10426PANTHER:PTHR10426:SF24PFAM:PF03088ProteinID:CDX76030
ProteinID:CDX76030.1SUPFAM:SSF63829TMHMM:TMhelixUniParc:UPI0004EE2B9DMapMan:50.4.3:
Description
BnaA04g02940D
Coordinates
chrLK031806:-:296085..297749
Molecular Weight (calculated)
42213.7 Da
IEP (calculated)
5.979
GRAVY (calculated)
-0.190
Length
376 amino acids
Sequence
(BLAST)
001: MPISERVLKQ VAAFPVVLAI VCYFFWPSII APDLLKGTKD VLQVAKTIPL PGDGPESLEF DSQGEGPYVG VTDGRILKWR GEELGWVEFA YSSPHRDNCS
101: RHKVVPSCGR PLGLSFHKET GDLYFCDGYF GVMKVGPEGG LAELVVDEAE GHKVMFANQM DIDQEEDVFY FNDSSDKYHF EQVFYVYMSG EKTGRVIRYD
201: MKKKEATVIM DKLHLPNGLA LSKDGSFVLT CESGTNTIHR IWVKGPKAGT NEVFAKIPGP MDNIRRTPTG DFWVALHSKD SLFTRVFLSH SFIGKFFIKT
301: LKMETAIHLV NGGKPHGILV KLSGETGEIL EILEDSEGKT MKYVSEAYER EDGKLWIGSV YWPAVWVLDK SVYDLK
Best Arabidopsis Sequence Match ( AT3G57010.1 )
(BLAST)
001: MPISRRVLTP ITAAPVILAV LCFFFWSSII GPDNLKGTKH VLQDAKTIPL PVDGPESLEF DPQGEGPYVG VTDGRILKWR GEELGWVDFA YTSPHRDNCS
101: SHEVVPSCGR PLGLSFERKT GDLYICDGYF GVMKVGPEGG LAELVVDEAE GRKVMFANQG DIDEEEDIFY FNDSSDTYHF RDVFYVSLSG TKVGRVIRYD
201: MKKKEAKVIM DKLRLPNGLA LSKNGSFVVT CESSTNICHR IWVKGPKSGT NEVFATLPGS PDNIRRTPTG DFWVALHCKK NLFTRAVLIH TWVGRFFMNT
301: MKMETVIHFM NGGKPHGIVV KLSGETGEIL EILEDSEGKT VKYVSEAYET KDGKLWIGSV YWPAVWVLDT SVYDSI
Arabidopsis Description
SSL8Protein STRICTOSIDINE SYNTHASE-LIKE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J7]
SUBAcon: [golgi,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.