CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 7
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003263.1-P	Field mustard	vacuole	98.92	98.92
CDX67673	Canola	vacuole	98.92	98.92
CDY30959	Canola	extracellular, golgi, vacuole	88.11	88.11
CDY06144	Canola	vacuole	85.95	86.18
CDY39351	Canola	extracellular, plasma membrane, vacuole	80.81	85.67
CDY30558	Canola	vacuole	85.95	85.25
CDX77108	Canola	vacuole	85.14	85.14
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	84.59	84.82
AT3G57020.1	Thale cress	vacuole	83.78	83.78
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	66.49	65.43
CDX76033	Canola	vacuole	66.22	65.16
CDY22517	Canola	vacuole	64.86	65.04
CDY30962	Canola	vacuole	65.95	64.89
CDX79943	Canola	vacuole	64.59	64.77
CDY30963	Canola	vacuole	65.68	64.63
CDY70367	Canola	cytosol	47.84	64.6
CDY23857	Canola	vacuole	64.32	64.5
CDY47397	Canola	vacuole	47.03	59.59
CDX72079	Canola	vacuole	38.92	43.64
KRG95135	Soybean	endoplasmic reticulum	41.89	41.78
KRH66809	Soybean	endoplasmic reticulum	41.62	41.51
CDY06143	Canola	vacuole	41.08	39.58
CDX95058	Canola	vacuole	39.46	39.04
CDX92388	Canola	vacuole	38.11	38.52
CDX93560	Canola	vacuole	40.81	38.42
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	40.0	37.47
CDY22515	Canola	vacuole	32.16	34.1
CDX73037	Canola	vacuole	29.73	33.54
CDX96505	Canola	vacuole	29.46	33.23
CDY35420	Canola	vacuole	31.35	33.14
CDX79944	Canola	vacuole	33.51	33.07
CDY23858	Canola	vacuole	33.24	32.89
CDY47728	Canola	vacuole	28.65	32.42
CDY45861	Canola	vacuole	27.03	30.3
CDX73039	Canola	vacuole	26.49	30.06
CDX96507	Canola	vacuole	26.49	30.06
CDX89027	Canola	endoplasmic reticulum, vacuole	32.7	29.95
CDX96506	Canola	vacuole	25.95	29.54
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	32.16	29.53
CDY66189	Canola	vacuole	23.51	29.29
CDX71901	Canola	extracellular, golgi, vacuole	31.89	29.28
CDX68204	Canola	vacuole	25.95	29.27
CDY45863	Canola	vacuole	25.68	29.23
CDY47729	Canola	vacuole	25.68	29.23
CDX73038	Canola	vacuole	25.68	29.23
CDY66188	Canola	vacuole	25.14	28.35
CDY33279	Canola	golgi, vacuole	20.54	20.49
CDY16306	Canola	golgi, vacuole	19.73	20.45
CDX73720	Canola	golgi, vacuole	20.54	20.43
CDY16307	Canola	golgi, vacuole	20.27	20.27
CDY33280	Canola	golgi, vacuole	19.73	19.73
CDX78005	Canola	vacuole	20.81	18.6

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078IVN3	UniProt:A0A078IVN3	EnsemblPlants:CDY54042
ProteinID:CDY54042	ProteinID:CDY54042.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016844	EnsemblPlantsGene:GSBRNA2T00012034001
InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI0004EDB5B4	SEG:seg	:	:

Description

BnaCnng26110DBnaCnng26110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVN3]

Coordinates

chrLK033269:+:40871..43035

Molecular Weight (calculated)

41389.8 Da

IEP (calculated)

6.411

GRAVY (calculated)

-0.252

Length

370 amino acids

Sequence
(BLAST)

001: MPISERVPTW AAVPAVFAVL AVISYQTLIT PYNLEGAKNV LPMGKTIPLP VDGPESIEWD PEGGGPYAAV VDGRILKWRG DDLGWVEFAH TSPHRGNCSR
101: HGVVPTCGRP LGLTFEKKTG DLYICDGYLG VMKVGPEGGL AELVVDQAEG RKVMFANQMD IDEEEDDLYF NDSSDKYHFR DVFYVVFNGE RSGRVIRYNK
201: KTKEAKVVMD NLRCNNGLAL NKDRSFVISC ESSTGLVHRY WIKGPKAGTR DIFAKVPGYP DNIRLTPTGD FWLGIHCKKN LIGRVIVNNQ WLGKLVEKTV
301: KLEFLIGLMN SFKPHGVAVK ISGETGEILE ILEDKEGETM QYVSEVYERD DGKLWLSSVF KPAVWVLDRK

Best Arabidopsis Sequence Match ( AT3G57020.1 )
(BLAST)

001: MPINQKIPTW FAVPAVFAVL SVISYQTLIV PENLEGAKNV LTMAKTIPIP VAGPESIEFD PKGEGPYAAV VDGRILKWRG DDLGWVDFAY TSPHRGNCSK
101: TEVVPTCGRP LGLTFEKKTG DLYICDGYLG LMKVGPEGGL AELIVDEAEG RKVMFANQGD IDEEEDVFYF NDSSDKYHFR DVFFVAVSGE RSGRVIRYDK
201: KTKEAKVIMD NLVCNNGLAL NKDRSFLITC ESGTSLVHRY WIKGPKAGTR DIFAKVPGYP DNIRLTSTGD FWIGLHCKKN LIGRLIVKYK WLGKLVEKTM
301: KLEYVIAFIN GFKPHGVAVK ISGETGEVLE LLEDKEGKTM KYVSEAYERD DGKLWFGSVY WPAVWVLDRK

Arabidopsis Description

SSL9Protein STRICTOSIDINE SYNTHASE-LIKE 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.