CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

cytosol 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014652.1-P	Field mustard	extracellular, golgi, vacuole	97.84	97.84
CDY39351	Canola	extracellular, plasma membrane, vacuole	89.19	94.56
CDX67673	Canola	vacuole	88.11	88.11
CDY54042	Canola	vacuole	88.11	88.11
CDY06144	Canola	vacuole	86.49	86.72
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	86.49	86.72
CDY30558	Canola	vacuole	87.03	86.33
CDX77108	Canola	vacuole	86.22	86.22
AT3G57020.1	Thale cress	vacuole	83.24	83.24
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	68.11	67.02
CDY30962	Canola	vacuole	67.57	66.49
CDX79943	Canola	vacuole	65.95	66.12
CDY22517	Canola	vacuole	65.95	66.12
CDX76033	Canola	vacuole	67.03	65.96
CDY23857	Canola	vacuole	65.68	65.85
CDY70367	Canola	cytosol	48.65	65.69
CDY30963	Canola	vacuole	66.76	65.69
CDY47397	Canola	vacuole	46.76	59.25
CDX72079	Canola	vacuole	37.84	42.42
KRH66809	Soybean	endoplasmic reticulum	41.08	40.97
KRG95135	Soybean	endoplasmic reticulum	41.08	40.97
CDY06143	Canola	vacuole	40.54	39.06
CDX95058	Canola	vacuole	38.38	37.97
CDX93560	Canola	vacuole	39.73	37.4
CDX92388	Canola	vacuole	36.76	37.16
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	38.92	36.46
CDY22515	Canola	vacuole	33.78	35.82
CDY35420	Canola	vacuole	32.97	34.86
CDX79944	Canola	vacuole	34.86	34.4
CDY23858	Canola	vacuole	34.59	34.22
CDX73037	Canola	vacuole	29.73	33.54
CDX96505	Canola	vacuole	28.92	32.62
CDY47728	Canola	vacuole	27.03	30.58
CDX89027	Canola	endoplasmic reticulum, vacuole	32.97	30.2
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	32.43	29.78
CDY45861	Canola	vacuole	26.49	29.7
CDX71901	Canola	extracellular, golgi, vacuole	32.16	29.53
CDY66189	Canola	vacuole	22.7	28.28
CDX96507	Canola	vacuole	24.86	28.22
CDX73039	Canola	vacuole	24.86	28.22
CDX96506	Canola	vacuole	24.59	28.0
CDX68204	Canola	vacuole	24.59	27.74
CDY45863	Canola	vacuole	24.32	27.69
CDY47729	Canola	vacuole	24.32	27.69
CDX73038	Canola	vacuole	24.32	27.69
CDY66188	Canola	vacuole	24.05	27.13
CDY16307	Canola	golgi, vacuole	20.81	20.81
CDY33279	Canola	golgi, vacuole	20.81	20.75
CDY33280	Canola	golgi, vacuole	20.54	20.54
CDY16306	Canola	golgi, vacuole	19.73	20.45
CDX73720	Canola	golgi, vacuole	20.54	20.43
CDX78005	Canola	vacuole	20.81	18.6

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078H0L7	UniProt:A0A078H0L7	EnsemblPlants:CDY30959
ProteinID:CDY30959	ProteinID:CDY30959.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016844	EnsemblPlantsGene:GSBRNA2T00046979001
InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI0004EE9967	SEG:seg	:	:

Description

BnaC04g24650DBnaC04g24650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0L7]

Coordinates

chrLK032265:-:975..3760

Molecular Weight (calculated)

41237.8 Da

IEP (calculated)

7.010

GRAVY (calculated)

-0.180

Length

370 amino acids

Sequence
(BLAST)

001: MPISEKLPTW AVVPAVLAVF SVIFYQILIA PDNLNGTKNV LSMAKTIPLP VDGPESIEWD PQGGGPYAAL VDGRILKWRG DGLGWVEFAY TSPRRGNCSR
101: HEVVPTCGSP LGLSFEKKTG DLYICDGYLG VMKVGPEGGL AELVVDQAEG RKVMFANQMD IDEEEDVFYF NDSSDKYHFR DVFYVIVNGE RPGRVIRYNK
201: KTKEAKVVMD NLRCNNGLAL NKDRSFLVSC ESATGLVHRY WIKGPKAGTR DIFAKVPGYP DNIRLTPTGD FWIGIHCKKN LLGRLVVNNQ WLGKLVEKTV
301: KLELLIGLVN GFKPHGVAVK ISGETGEIVE ILEDKEGKTM QYVSEAYERD DGKIWFGSVF TPAVWVLDRK

Best Arabidopsis Sequence Match ( AT3G57020.1 )
(BLAST)

001: MPINQKIPTW FAVPAVFAVL SVISYQTLIV PENLEGAKNV LTMAKTIPIP VAGPESIEFD PKGEGPYAAV VDGRILKWRG DDLGWVDFAY TSPHRGNCSK
101: TEVVPTCGRP LGLTFEKKTG DLYICDGYLG LMKVGPEGGL AELIVDEAEG RKVMFANQGD IDEEEDVFYF NDSSDKYHFR DVFFVAVSGE RSGRVIRYDK
201: KTKEAKVIMD NLVCNNGLAL NKDRSFLITC ESGTSLVHRY WIKGPKAGTR DIFAKVPGYP DNIRLTSTGD FWIGLHCKKN LIGRLIVKYK WLGKLVEKTM
301: KLEYVIAFIN GFKPHGVAVK ISGETGEVLE LLEDKEGKTM KYVSEAYERD DGKLWFGSVY WPAVWVLDRK

Arabidopsis Description

SSL9Protein STRICTOSIDINE SYNTHASE-LIKE 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1J6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.