CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

plastid 1
mitochondrion 1
vacuole 3
extracellular 3
endoplasmic reticulum 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	96.03	96.03
Bra007457.1-P	Field mustard	golgi, vacuole	95.53	93.22
CDX89027	Canola	endoplasmic reticulum, vacuole	92.06	91.83
AT3G59530.3	Thale cress	golgi, vacuole	89.58	89.58
VIT_05s0102g00880.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	74.44	73.89
KRH10120	Soybean	endoplasmic reticulum	74.94	73.66
KRH23218	Soybean	golgi, vacuole	74.44	73.17
PGSC0003DMT400030927	Potato	golgi, plasma membrane, vacuole	69.73	69.04
Solyc03g053130.2.1	Tomato	extracellular	69.98	68.12
TraesCS4B01G215300.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	64.27	62.71
TraesCS4D01G215800.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	64.02	62.47
TraesCS4A01G089000.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, vacuole	64.02	62.47
HORVU4Hr1G061230.2	Barley	peroxisome, vacuole	65.26	61.45
EER92507	Sorghum	cytosol, golgi, mitochondrion, vacuole	62.03	60.68
Zm00001d047858_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, vacuole	61.29	59.95
Os03t0263600-01	Rice	cytosol, golgi, mitochondrion, vacuole	63.28	59.72
GSMUA_Achr11P...	Banana	golgi, vacuole	53.35	55.99
CDX92388	Canola	vacuole	38.96	42.9
CDX95058	Canola	vacuole	39.7	42.78
CDX93560	Canola	vacuole	41.19	42.24
CDX72079	Canola	vacuole	33.99	41.52
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	39.95	40.76
CDY70367	Canola	cytosol	26.8	39.42
CDY06143	Canola	vacuole	36.23	38.02
CDY23857	Canola	vacuole	33.25	36.31
CDY22517	Canola	vacuole	33.25	36.31
CDX79943	Canola	vacuole	33.0	36.04
CDY22515	Canola	vacuole	30.02	34.67
CDY35420	Canola	vacuole	30.02	34.57
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	31.27	33.51
CDX76033	Canola	vacuole	31.02	33.24
CDY47397	Canola	vacuole	24.07	33.22
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	30.02	32.79
CDY30963	Canola	vacuole	30.52	32.71
CDY30558	Canola	vacuole	30.27	32.71
CDX77108	Canola	vacuole	30.02	32.7
CDY06144	Canola	vacuole	29.78	32.52
CDY30962	Canola	vacuole	30.27	32.45
CDY23858	Canola	vacuole	30.02	32.35
CDY30959	Canola	extracellular, golgi, vacuole	29.53	32.16
CDY54042	Canola	vacuole	29.28	31.89
CDX79944	Canola	vacuole	29.53	31.73
CDX67673	Canola	vacuole	28.78	31.35
CDY39351	Canola	extracellular, plasma membrane, vacuole	27.05	31.23
CDY47728	Canola	vacuole	23.08	28.44
CDY45861	Canola	vacuole	23.08	28.18
CDX96505	Canola	vacuole	22.83	28.05
CDX73037	Canola	vacuole	22.83	28.05
CDX96506	Canola	vacuole	22.33	27.69
CDX96507	Canola	vacuole	22.33	27.61
CDY47729	Canola	vacuole	22.08	27.38
CDX73038	Canola	vacuole	22.08	27.38
CDX73039	Canola	vacuole	22.08	27.3
CDX73720	Canola	golgi, vacuole	24.81	26.88
CDY45863	Canola	vacuole	21.59	26.77
CDY33279	Canola	golgi, vacuole	24.32	26.42
CDY16307	Canola	golgi, vacuole	23.57	25.68
CDY66188	Canola	vacuole	20.84	25.61
CDX68204	Canola	vacuole	20.84	25.61
CDY33280	Canola	golgi, vacuole	23.08	25.14
CDY66189	Canola	vacuole	18.11	24.58
CDY16306	Canola	golgi, vacuole	21.59	24.37
CDX78005	Canola	vacuole	23.33	22.71

Protein Annotations

EnsemblPlants:CDX71901	EnsemblPlantsGene:GSBRNA2T00155641001	Gene3D:2.120.10.30	GO:A0A078C4G5	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016844	InterPro:6-blade_b-propeller_TolB-like	InterPro:IPR011042
InterPro:Strictosidine_synth_cons-reg	InterPro:Strictosidine_synthase	PANTHER:PTHR10426	PANTHER:PTHR10426:SF21	PFAM:PF03088	ProteinID:CDX71901
ProteinID:CDX71901.1	SUPFAM:SSF63829	TMHMM:TMhelix	UniParc:UPI0004EF3F8C	MapMan:50.4.3	:

Description

BnaC08g29730D

Coordinates

chrLK031795:-:1087083..1088550

Molecular Weight (calculated)

45422.8 Da

IEP (calculated)

7.233

GRAVY (calculated)

-0.213

Length

403 amino acids

Sequence
(BLAST)

001: MEKKGHRSTH DSLLTHHPVL CIIALSVIFI AIDPFHISPV GGREFKPVKH EVAPYKQVMD NWPRDNLSRL GHHGKLEFVE EVFGPESLEF DGLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VATSKWSEKT CARGVDSTTN KQWKHEKLCG RPLGLRFDKE SGNLFIADAY YGLLVVGPEG GVATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHVVL DGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGSKRGE VEVVADLPGF
301: PDNVRMNEKG EFWVAIDCCR TPVQEVLTNN PWIKSIYFRL PIPMKLLATA MGMRMYTVIS RFDEDGKVLE VLEDRQGKVM KLLWIGTVAH NHIATLPYPL
401: AVN

Best Arabidopsis Sequence Match ( AT3G59530.1 )
(BLAST)

001: MEKKGQHGTY ESMMTHHPIL CIIALSVLFI AIDPFHMSPI GGREFKPVKH EVAPYKEVMG SWPRDNLSRL GNHGKLEFVD QVFGPESLEF DSLGRGPYTG
101: LADGRVVRWM GEAIGWETFS VVTSKWSEEA CVRGVDSTTN KQWKHEKLCG RPLGLRFHKE TGNLYIADAY YGLLVVGPEG GIATPLATHV EGKPILFAND
201: LDIHRNGSIF FTDTSKRYDR ANHFFILLEG ESTGRLLRYD PPTKTTHIVL EGLAFPNGIQ LSKDQSFLLF TETTNCRLVK YWLEGPKMGE VEVVADLPGF
301: PDNVRINEEG QFWVAIDCCR TPAQEVLTNN PWIRSIYFRL PIPMKLLAKT MGMRMYTVIS RFDEEGKVLE VLEDRQGKVM KLWIGTVAHN HIATLPYPLT
401: MNQ

Arabidopsis Description

SSL13Protein STRICTOSIDINE SYNTHASE-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1B4]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.