CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

cytosol 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014652.1-P	Field mustard	extracellular, golgi, vacuole	95.42	90.0
CDY30959	Canola	extracellular, golgi, vacuole	94.56	89.19
CDX67673	Canola	vacuole	85.67	80.81
CDY54042	Canola	vacuole	85.67	80.81
CDX77108	Canola	vacuole	83.95	79.19
CDY30558	Canola	vacuole	84.53	79.09
CDY06144	Canola	vacuole	82.81	78.32
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	82.52	78.05
AT3G57020.1	Thale cress	vacuole	81.09	76.49
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	67.34	62.5
CDY30962	Canola	vacuole	67.05	62.23
CDX76033	Canola	vacuole	66.48	61.7
CDY30963	Canola	vacuole	66.48	61.7
CDY22517	Canola	vacuole	64.47	60.98
CDX79943	Canola	vacuole	63.32	59.89
CDY23857	Canola	vacuole	63.04	59.62
CDY70367	Canola	cytosol	46.42	59.12
CDY47397	Canola	vacuole	44.41	53.08
CDX72079	Canola	vacuole	36.96	39.09
KRH66809	Soybean	endoplasmic reticulum	40.11	37.74
KRG95135	Soybean	endoplasmic reticulum	40.11	37.74
CDY06143	Canola	vacuole	39.83	36.2
CDX95058	Canola	vacuole	37.25	34.76
CDX93560	Canola	vacuole	38.97	34.61
CDX92388	Canola	vacuole	35.53	33.88
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	37.82	33.42
CDY22515	Canola	vacuole	33.24	33.24
CDY35420	Canola	vacuole	32.38	32.29
CDX79944	Canola	vacuole	34.67	32.27
CDY23858	Canola	vacuole	34.1	31.82
CDX73037	Canola	vacuole	29.23	31.1
CDX96505	Canola	vacuole	28.37	30.18
CDX89027	Canola	endoplasmic reticulum, vacuole	31.81	27.48
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	31.52	27.3
CDX71901	Canola	extracellular, golgi, vacuole	31.23	27.05
CDY47728	Canola	vacuole	25.21	26.91
CDY45861	Canola	vacuole	24.36	25.76
CDX73039	Canola	vacuole	23.5	25.15
CDX96506	Canola	vacuole	23.21	24.92
CDY66189	Canola	vacuole	21.2	24.92
CDX96507	Canola	vacuole	23.21	24.85
CDX68204	Canola	vacuole	23.21	24.7
CDX73038	Canola	vacuole	22.92	24.62
CDY45863	Canola	vacuole	22.64	24.31
CDY47729	Canola	vacuole	22.64	24.31
CDY66188	Canola	vacuole	22.64	24.09
CDY16306	Canola	golgi, vacuole	20.06	19.61
CDY33279	Canola	golgi, vacuole	20.06	18.87
CDX73720	Canola	golgi, vacuole	20.06	18.82
CDY16307	Canola	golgi, vacuole	19.77	18.65
CDY33280	Canola	golgi, vacuole	19.48	18.38
CDX78005	Canola	vacuole	20.06	16.91

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078HP31	UniProt:A0A078HP31	EnsemblPlants:CDY39351
ProteinID:CDY39351	ProteinID:CDY39351.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016844	EnsemblPlantsGene:GSBRNA2T00067790001
InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI0004EEDD26	SEG:seg	:	:

Description

BnaC05g15360DBnaC05g15360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP31]

Coordinates

chrLK032446:+:141879..144190

Molecular Weight (calculated)

38708.7 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.167

Length

349 amino acids

Sequence
(BLAST)

001: MPISEKLPTW AVVPAVFAVF SVISYQILIA PDNLNGTKNV LSMAKTIPLP VDGPESIEWD SQGGGPYAAV VDGRILKWRG DGLGWAELAY TSPHRGNCSR
101: HEVVPTCGRP LGLSFEKKTG DLYICDGYIG VMKVGPEGGL AELVVDQAEG RKVMFANQMD IDEEEDVFYF NDSSDKYHFR DIFYVIVNGE RPGRVIRYKK
201: KTKEAKVVMD NLRCNNGPKA GTRDIFAKVP GYPDNIRLTP IGDFWIGIHC KKNLLGRLVV NNQWLGKLVE KTVKLELLIG LVNGFKPHGV AVKISGETGE
301: IVEILEDKEG KTMQYVSEAY ERDDGKIWFG SVFTPAVWVL DVKLDGLPT

Best Arabidopsis Sequence Match ( AT2G41300.1 )
(BLAST)

001: MESLLLIAYA FLYLFLLSHE AEYKINADQS ENSNVGRFGG NYGRLGRLSG SIHHWTGEYR GLEKRPNHSE DNPPSRGWTG EPGLDPRGEG PYVGVTDGRI
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ

Arabidopsis Description

SSL1Protein STRICTOSIDINE SYNTHASE-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IJZ6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.