CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

cytosol 1
extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70367	Canola	cytosol	72.9	98.18
CDX79943	Canola	vacuole	90.79	90.79
CDY23857	Canola	vacuole	90.51	90.51
AT2G41300.1	Thale cress	vacuole	78.32	73.35
CDX76030	Canola	endoplasmic reticulum, golgi, vacuole	69.11	67.82
CDY30963	Canola	vacuole	68.83	67.55
CDX76033	Canola	vacuole	68.56	67.29
CDY30962	Canola	vacuole	68.29	67.02
CDY30959	Canola	extracellular, golgi, vacuole	66.12	65.95
CDX77108	Canola	vacuole	66.12	65.95
CDY30558	Canola	vacuole	66.12	65.42
CDY54042	Canola	vacuole	65.04	64.86
CDY39351	Canola	extracellular, plasma membrane, vacuole	60.98	64.47
CDX67673	Canola	vacuole	64.5	64.32
CDY47397	Canola	vacuole	50.68	64.04
CDX72080	Canola	endoplasmic reticulum, extracellular, golgi	63.14	63.14
CDY06144	Canola	vacuole	62.6	62.6
CDX72079	Canola	vacuole	43.63	48.79
CDY06143	Canola	vacuole	46.88	45.05
KRH66809	Soybean	endoplasmic reticulum	44.99	44.74
KRG95135	Soybean	endoplasmic reticulum	44.72	44.47
CDX92388	Canola	vacuole	39.57	39.89
CDX95058	Canola	vacuole	40.38	39.84
CDY16615	Canola	endoplasmic reticulum, extracellular, vacuole	42.01	39.24
CDX93560	Canola	vacuole	41.46	38.93
CDY22515	Canola	vacuole	33.88	35.82
CDY35420	Canola	vacuole	33.06	34.86
CDX79944	Canola	vacuole	34.96	34.4
CDX73037	Canola	vacuole	30.35	34.15
CDY23858	Canola	vacuole	34.42	33.96
CDY47728	Canola	vacuole	29.81	33.64
CDX89027	Canola	endoplasmic reticulum, vacuole	36.59	33.42
CDX71901	Canola	extracellular, golgi, vacuole	36.31	33.25
CDY05993	Canola	endoplasmic reticulum, golgi, vacuole	36.31	33.25
CDY45861	Canola	vacuole	29.54	33.03
CDX96505	Canola	vacuole	29.27	32.93
CDY66189	Canola	vacuole	26.02	32.32
CDX96506	Canola	vacuole	28.18	32.0
CDX68204	Canola	vacuole	27.91	31.4
CDX73038	Canola	vacuole	27.64	31.38
CDX73039	Canola	vacuole	27.64	31.29
CDX96507	Canola	vacuole	27.64	31.29
CDY66188	Canola	vacuole	27.64	31.1
CDY47729	Canola	vacuole	27.1	30.77
CDY45863	Canola	vacuole	26.83	30.46
CDY16307	Canola	golgi, vacuole	22.76	22.7
CDY33279	Canola	golgi, vacuole	22.49	22.37
CDY33280	Canola	golgi, vacuole	22.22	22.16
CDY16306	Canola	golgi, vacuole	20.87	21.57
CDX73720	Canola	golgi, vacuole	21.41	21.24
CDX78005	Canola	vacuole	21.95	19.57

Protein Annotations

Gene3D:2.120.10.30	MapMan:50.4.3	InterPro:6-blade_b-propeller_TolB-like	GO:A0A078GBW5	UniProt:A0A078GBW5	EnsemblPlants:CDY22517
ProteinID:CDY22517	ProteinID:CDY22517.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016021	GO:GO:0016844	EnsemblPlantsGene:GSBRNA2T00019092001
InterPro:IPR011042	PFAM:PF03088	PANTHER:PTHR10426	PANTHER:PTHR10426:SF24	SUPFAM:SSF63829	InterPro:Strictosidine_synth_cons-reg
InterPro:Strictosidine_synthase	TMHMM:TMhelix	UniParc:UPI0004EEE07D	SEG:seg	:	:

Description

BnaC03g23270DBnaC03g23270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBW5]

Coordinates

chrLK032132:-:322925..325272

Molecular Weight (calculated)

41286.8 Da

IEP (calculated)

7.866

GRAVY (calculated)

-0.164

Length

369 amino acids

Sequence
(BLAST)

001: MPISRKFWTW AVATAVIAVL VVFVGPSIIG PESILGSKNV LTTAKMIPLP VDGPESLDWD PRGEGPYVGV TDGRILKWRG SDLGWVEFAY SSPHRGNCSS
101: HKVEPACGRP LGLSFEKKTG DLYFCDGYFG VMKVGPKGGL AEKVVDEVEG QKIMFANQMD IDEEEDVFYF NDSSDTYHFG DVFFAFLCGE KTGRAIRYDK
201: KSKEAKVIMD RLHFPNGLAI SKDGSFVLSC EVPTQLVHRY WAKGPKAGTR DVFAKLPGYA DNIRRTEKGD FWIALHSKKT PFSRFSLMHP WIGKFFMKTL
301: KMDLLVFLFE GGKPHAVAVK LCGKTGKVLE VLEDSEGKNM NFISEVQERD GKLWFGSVFL PSVWVLDHQ

Best Arabidopsis Sequence Match ( AT2G41300.1 )
(BLAST)

001: MESLLLIAYA FLYLFLLSHE AEYKINADQS ENSNVGRFGG NYGRLGRLSG SIHHWTGEYR GLEKRPNHSE DNPPSRGWTG EPGLDPRGEG PYVGVTDGRI
101: LKWSGEDLGW IEFAYSSPHR KNCSSHKVEP ACGRPLGLSF EKKSGDLYFC DGYLGVMKVG PKGGLAEKVV DEVEGQKVMF ANQMDIDEEE DAIYFNDSSD
201: TYHFGDVFYA FLCGEKTGRA IRYDKKTKEA KVIMDRLHFP NGLALSIDGS FVLSCEVPTQ LVHRYWAKGP NAGTRDIFAK LPGYADNIRR TETGDFWVAL
301: HSKKTPFSRL SMIHPWVGKF FIKTLKMELL VFLFEGGKPH AVAVKLSGKT GEIMEILEDS EGKNMKFISE VQERDGRLWF GSVFLPSVWV LDRQ

Arabidopsis Description

SSL1Protein STRICTOSIDINE SYNTHASE-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4IJZ6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.